Construct: ORF ccsbBroadEn_06050

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF013919.1_s300c1, BRDN0000387420
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CSF2RA (1438)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 1438 CSF2RA colony stimulating factor 2... NM_001161529.1 99.9% 99.7% 1067T>N
2 human 1438 CSF2RA colony stimulating factor 2... NM_006140.5 99.9% 99.7% 1067T>N
3 human 1438 CSF2RA colony stimulating factor 2... NM_172245.3 99.9% 99.7% 1067T>N
4 human 1438 CSF2RA colony stimulating factor 2... XM_011545619.1 99.9% 99.7% 1067T>N
5 human 1438 CSF2RA colony stimulating factor 2... XM_011546166.1 99.9% 99.7% 1067T>N
6 human 1438 CSF2RA colony stimulating factor 2... XM_011545622.1 95.3% 94.2% (many diffs)
7 human 1438 CSF2RA colony stimulating factor 2... XM_011546169.1 95.3% 94.2% (many diffs)
8 human 1438 CSF2RA colony stimulating factor 2... XM_011545623.3 95.2% 93.7% (many diffs)
9 human 1438 CSF2RA colony stimulating factor 2... XM_011546170.3 95.2% 93.7% (many diffs)
10 human 1438 CSF2RA colony stimulating factor 2... XM_017029287.1 95.2% 93.7% (many diffs)
11 human 1438 CSF2RA colony stimulating factor 2... XM_017030028.1 95.2% 93.7% (many diffs)
12 human 1438 CSF2RA colony stimulating factor 2... XM_011545621.2 94.7% 93.7% (many diffs)
13 human 1438 CSF2RA colony stimulating factor 2... XM_011546168.2 94.7% 93.7% (many diffs)
14 human 1438 CSF2RA colony stimulating factor 2... XM_011545620.2 94.3% 92.8% (many diffs)
15 human 1438 CSF2RA colony stimulating factor 2... XM_011546167.2 94.3% 92.8% (many diffs)
16 human 1438 CSF2RA colony stimulating factor 2... NM_001161531.1 93.8% 91.9% (many diffs)
17 human 1438 CSF2RA colony stimulating factor 2... XM_011545618.3 93.8% 91.9% (many diffs)
18 human 1438 CSF2RA colony stimulating factor 2... XM_011546165.3 93.8% 91.9% (many diffs)
19 human 1438 CSF2RA colony stimulating factor 2... NM_001161530.1 92% 91.9% 946_1047del;1169T>N
20 human 1438 CSF2RA colony stimulating factor 2... NM_172247.2 83.1% 77.1% 945_946ins97;970T>N;999_1000ins104
21 human 1438 CSF2RA colony stimulating factor 2... XM_011545626.1 83.1% 77.1% 945_946ins97;970T>N;999_1000ins104
22 human 1438 CSF2RA colony stimulating factor 2... XM_011545627.3 83.1% 77.1% 945_946ins97;970T>N;999_1000ins104
23 human 1438 CSF2RA colony stimulating factor 2... XM_011545628.2 83.1% 77.1% 945_946ins97;970T>N;999_1000ins104
24 human 1438 CSF2RA colony stimulating factor 2... XM_011546173.1 83.1% 77.1% 945_946ins97;970T>N;999_1000ins104
25 human 1438 CSF2RA colony stimulating factor 2... XM_011546174.3 83.1% 77.1% 945_946ins97;970T>N;999_1000ins104
26 human 1438 CSF2RA colony stimulating factor 2... XM_011546175.2 83.1% 77.1% 945_946ins97;970T>N;999_1000ins104
27 human 1438 CSF2RA colony stimulating factor 2... XM_017029288.1 83.1% 77.1% 945_946ins97;970T>N;999_1000ins104
28 human 1438 CSF2RA colony stimulating factor 2... XM_017030029.1 83.1% 77.1% 945_946ins97;970T>N;999_1000ins104
29 human 1438 CSF2RA colony stimulating factor 2... NM_172246.3 77.9% 72.8% 945_946ins179;1022_1131del
30 human 1438 CSF2RA colony stimulating factor 2... NM_001161532.1 66.6% 66.5% 0_1ins399;668T>N
31 human 1438 CSF2RA colony stimulating factor 2... NM_172249.3 58.1% 54.2% 644_645ins397;670T>N;699_700ins104
32 human 1438 CSF2RA colony stimulating factor 2... NR_027760.2 46.5% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1266
ORF length:
1200
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag
61ttACCATGCT TCTCCTGGTG ACAAGCCTTC TGCTCTGTGA GTTACCACAC CCAGCATTCC
121TCCTGATCCC AGAGAAATCG GATCTGCGAA CAGTGGCACC AGCCTCTAGT CTCAATGTGA
181GGTTTGACTC CAGGACGATG AATTTAAGCT GGGACTGCCA AGAAAACACA ACCTTCAGCA
241AGTGTTTCTT AACTGACAAG AAGAACAGAG TCGTGGAACC CAGGCTCAGT AACAACGAAT
301GTTCGTGCAC ATTTCGTGAA ATTTGTCTGC ATGAAGGAGT CACATTTGAG GTTCACGTGA
361ATACTAGTCA AAGAGGATTT CAACAGAAAC TGCTTTATCC AAATTCAGGA AGGGAGGGTA
421CCGCTGCTCA GAATTTCTCC TGTTTCATCT ACAATGCGGA TTTAATGAAC TGTACCTGGG
481CGAGGGGTCC GACGGCCCCC CGTGACGTCC AGTATTTTTT GTACATACGA AACTCAAAGA
541GAAGGAGGGA GATCCGGTGT CCTTATTACA TACAAGACTC AGGAACCCAT GTGGGATGTC
601ACCTGGATAA CCTGTCAGGA TTAACGTCTC GCAATTACTT TCTGGTTAAC GGAACCAGCC
661GAGAAATTGG CATCCAATTC TTTGATTCAC TTTTGGACAC AAAGAAAATA GAACGATTCA
721ACCCTCCCAG CAATGTCACC GTACGTTGCA ACACGACGCA CTGCCTCGTA CGGTGGAAAC
781AGCCCAGGAC CTATCAGAAG CTGTCGTACC TGGACTTTCA GTACCAGCTG GACGTCCACA
841GAAAGAATAC CCAGCCTGGC ACGGAAAACC TACTGATTAA TGTTTCTGGT GATTTGGAAA
901ATAGATACAA CTTTCCAAGC TCTGAGCCCA GAGCAAAACA CAGTGTGAAG ATCAGAGCTG
961CAGACGTCCG CATCTTGAAT TGGAGCTCCT GGAGTGAAGC CATTGAATTT GGTTCTGACG
1021ACGGGAACCT CGGCTCTGTG TACATTTATG TGCTCCTAAT CGTGGGAACC CTTGTCTGTG
1081GCATCGTCCT CGGCTTCCTC TTTAAAAGGT TCCTTAGGAT ACAGCGGCTG TNCCCGCCAG
1141TTCCACAGAT CAAAGACAAA CTGAATGATA ACCATGAGGT GGAAGACGAG ATCATCTGGG
1201AGGAATTCAC CCCAGAGGAA GGGAAAGGCT ACCGCGAAGA GGTCTTGACC GTGAAGGAAA
1261TTACCTGNAc aactttcttg tacaaagttg gcattataag aaagcattgc ttatcaattt
1321gttgcaacga ac

Download FASTA (ORF) (Full)