Transcript: Human XM_011545621.2

PREDICTED: Homo sapiens colony stimulating factor 2 receptor alpha subunit (CSF2RA), transcript variant X4, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
CSF2RA (1438)
Length:
1267
CDS:
73..1233

Additional Resources:

NCBI RefSeq record:
XM_011545621.2
NBCI Gene record:
CSF2RA (1438)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011545621.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000377767 TCATCTACAATGCGGATTTAA pLKO_005 452 CDS 100% 15.000 21.000 N CSF2RA n/a
2 TRCN0000371976 AGGATTAACGTCTCGCAATTA pLKO_005 624 CDS 100% 13.200 18.480 N CSF2RA n/a
3 TRCN0000058251 CGGTGTCCTTATTACATACAA pLKO.1 562 CDS 100% 5.625 7.875 N CSF2RA n/a
4 TRCN0000058248 GCCGAGAAATTGGCATCCAAT pLKO.1 665 CDS 100% 4.950 6.930 N CSF2RA n/a
5 TRCN0000058252 CCAGGCTCAGTAACAACGAAT pLKO.1 287 CDS 100% 4.950 3.960 N CSF2RA n/a
6 TRCN0000377768 TTCGTGCACATTTCGTGAAAT pLKO_005 309 CDS 100% 13.200 9.240 N CSF2RA n/a
7 TRCN0000058249 CCTGGAGTGAAGCCATTGAAT pLKO.1 995 CDS 100% 5.625 3.375 N CSF2RA n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011545621.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_06050 pDONR223 98.9% 94.7% 93.7% None (many diffs) n/a
2 ccsbBroad304_06050 pLX_304 0% 94.7% 93.7% V5 (many diffs) n/a
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