Construct: ORF ccsbBroadEn_06364

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF011749.1_s300c1, BRDN0000392336
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
NRG1 (3084)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 3084 NRG1 neuregulin 1 NM_013959.3 99.8% 99.6% 397G>C
2 human 3084 NRG1 neuregulin 1 NM_001322207.2 59.5% 59.2% (many diffs)
3 human 3084 NRG1 neuregulin 1 NM_001322206.2 55.1% 54.7% (many diffs)
4 human 3084 NRG1 neuregulin 1 XM_005273487.3 42.5% 40.7% (many diffs)
5 human 3084 NRG1 neuregulin 1 XM_005273486.3 41.5% 38.3% (many diffs)
6 human 3084 NRG1 neuregulin 1 NM_001322205.2 41.2% 40.8% (many diffs)
7 mouse 211323 Nrg1 neuregulin 1 XM_017312637.1 48.5% 47.7% (many diffs)
8 mouse 211323 Nrg1 neuregulin 1 XM_017312636.1 37% 35.4% (many diffs)
9 mouse 211323 Nrg1 neuregulin 1 NM_178591.2 36.2% 35.5% (many diffs)
10 mouse 211323 Nrg1 neuregulin 1 XM_006509069.2 35% 34.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
954
ORF length:
888
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGA GATTTATTCC CCAGACATGT CTGAGGTCGC CGCCGAGAGG TCCTCCAGCC
121CCTCCACTCA GCTGAGTGCA GACCCATCTC TTGATGGGCT TCCGGCAGCA GAAGACATGC
181CAGAGCCCCA GACTGAAGAT GGGAGAACCC CTGGACTCGT GGGCCTGGCC GTGCCCTGCT
241GTGCGTGCCT AGAAGCTGAG CGCCTGAGAG GTTGCCTCAA CTCAGAGAAA ATCTGCATTG
301TCCCCATCCT GGCTTGCCTG GTCAGCCTCT GCCTCTGCAT CGCCGGCCTC AAGTGGGTAT
361TTGTGGACAA GATCTTTGAA TATGACTCTC CTACTCACCT TGACCCTGGG GGGTTAGGCC
421AGGACCCTAT TATTTCTCTG GACGCAACTG CTGCCTCAGC TCTGTGGGTG TCGTCTGAGG
481CATACACTTC ACCTGTCTCT AGGGCTCAAT CTGAAAGTGA GGTTCAAGTT ACAGTGCAAG
541GTGACAAGGC TGTTGTCTCC TTTGAACCAT CAGCGGCACC GACACCGAAG AATCGTATTT
601TTGCCTTTTC TTTCTTGCCG TCCACTGCGC CATCCTTCCC TTCACCCACC CGGAACCCTG
661AGGTGAGAAC GCCCAAGTCA GCAACTCAGC CACAAACAAC AGAAACTAAT CTCCAAACTG
721CTCCTAAACT TTCTACATCT ACATCCACCA CTGGGACAAG CCATCTTGTA AAATGTGCGG
781AGAAGGAGAA AACTTTCTGT GTGAATGGAG GGGAGTGCTT CATGGTGAAA GACCTTTCAA
841ACCCCTCGAG ATACTTGTGC AAGTGCCCAA ATGAGTTTAC TGGTGATCGC TGCCAAAACT
901ACGTAATGGC CAGCTTCTAC AGTACGTCCA CTCCCTTTCT GTCTCTGCCT GAATACCCAA
961CTTTCTTGTA CAAAGTtggc attataagaa agcattgctt atcaatttgt tgcaacgaac

Download FASTA (ORF) (Full)