Construct: ORF ccsbBroadEn_06390

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005137.1_s300c1, BRDN0000398618
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
HNRNPH2 (3188)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 3188 HNRNPH2 heterogeneous nuclear ribon... NM_001032393.2 99.9% 100% 399G>T
2 human 3188 HNRNPH2 heterogeneous nuclear ribon... NM_019597.5 99.9% 100% 399G>T
3 human 3187 HNRNPH1 heterogeneous nuclear ribon... NM_001257293.2 87.5% 96.2% (many diffs)
4 human 3187 HNRNPH1 heterogeneous nuclear ribon... NM_001364233.1 87.5% 96.2% (many diffs)
5 human 3187 HNRNPH1 heterogeneous nuclear ribon... NM_001364234.1 87.5% 96.2% (many diffs)
6 human 3187 HNRNPH1 heterogeneous nuclear ribon... NM_001364235.1 87.5% 96.2% (many diffs)
7 human 3187 HNRNPH1 heterogeneous nuclear ribon... NM_001364236.2 87.5% 96.2% (many diffs)
8 human 3187 HNRNPH1 heterogeneous nuclear ribon... NM_001364237.2 87.5% 96.2% (many diffs)
9 human 3187 HNRNPH1 heterogeneous nuclear ribon... NM_001364238.2 87.5% 96.2% (many diffs)
10 human 3187 HNRNPH1 heterogeneous nuclear ribon... NM_001364239.2 87.5% 96.2% (many diffs)
11 human 3187 HNRNPH1 heterogeneous nuclear ribon... NM_005520.3 87.5% 96.2% (many diffs)
12 human 3187 HNRNPH1 heterogeneous nuclear ribon... NM_001364231.2 87.1% 95.3% (many diffs)
13 human 3187 HNRNPH1 heterogeneous nuclear ribon... NM_001364241.2 85.9% 94.6% (many diffs)
14 human 3187 HNRNPH1 heterogeneous nuclear ribon... NM_001364242.2 85.9% 94.6% (many diffs)
15 human 3187 HNRNPH1 heterogeneous nuclear ribon... NM_001364243.2 85.9% 94.6% (many diffs)
16 human 3187 HNRNPH1 heterogeneous nuclear ribon... NM_001364244.2 85.4% 93.7% (many diffs)
17 human 3187 HNRNPH1 heterogeneous nuclear ribon... NM_001364246.2 83.7% 92.4% (many diffs)
18 human 3187 HNRNPH1 heterogeneous nuclear ribon... NM_001364247.2 83.7% 92.4% (many diffs)
19 human 3187 HNRNPH1 heterogeneous nuclear ribon... NM_001363572.2 83.4% 92.2% (many diffs)
20 human 3187 HNRNPH1 heterogeneous nuclear ribon... NM_001364245.2 83.4% 92.2% (many diffs)
21 human 3187 HNRNPH1 heterogeneous nuclear ribon... NM_001364225.1 82.4% 89.6% (many diffs)
22 human 3187 HNRNPH1 heterogeneous nuclear ribon... NM_001364226.1 82.4% 89.6% (many diffs)
23 human 3187 HNRNPH1 heterogeneous nuclear ribon... NM_001364227.2 82.4% 89.6% (many diffs)
24 human 3187 HNRNPH1 heterogeneous nuclear ribon... NM_001364228.2 82.4% 89.6% (many diffs)
25 human 3187 HNRNPH1 heterogeneous nuclear ribon... NM_001364229.2 82.4% 89.6% (many diffs)
26 human 3187 HNRNPH1 heterogeneous nuclear ribon... NM_001364248.2 81.9% 90.6% (many diffs)
27 human 3187 HNRNPH1 heterogeneous nuclear ribon... NM_001364230.2 78.5% 85.8% (many diffs)
28 human 3187 HNRNPH1 heterogeneous nuclear ribon... NM_001364232.2 78.5% 85.8% (many diffs)
29 human 3187 HNRNPH1 heterogeneous nuclear ribon... NM_001364250.2 77.7% 85.3% (many diffs)
30 human 3187 HNRNPH1 heterogeneous nuclear ribon... NM_001364240.2 77% 84.3% (many diffs)
31 human 3187 HNRNPH1 heterogeneous nuclear ribon... NM_001364254.2 48.7% 53.2% (many diffs)
32 human 3187 HNRNPH1 heterogeneous nuclear ribon... NM_001364255.2 48.7% 53.2% (many diffs)
33 human 3187 HNRNPH1 heterogeneous nuclear ribon... NM_001364251.2 45.6% 48.7% (many diffs)
34 human 3187 HNRNPH1 heterogeneous nuclear ribon... NM_001364252.2 45.6% 48.7% (many diffs)
35 human 3187 HNRNPH1 heterogeneous nuclear ribon... NM_001364253.1 45.6% 48.7% (many diffs)
36 mouse 56258 Hnrnph2 heterogeneous nuclear ribon... NM_001313716.1 93.6% 99.1% (many diffs)
37 mouse 56258 Hnrnph2 heterogeneous nuclear ribon... NM_001313717.1 93.6% 99.1% (many diffs)
38 mouse 56258 Hnrnph2 heterogeneous nuclear ribon... NM_019868.4 93.6% 99.1% (many diffs)
39 mouse 59013 Hnrnph1 heterogeneous nuclear ribon... NM_021510.2 87.6% 95.9% (many diffs)
40 mouse 59013 Hnrnph1 heterogeneous nuclear ribon... XM_017314690.1 87.6% 95.9% (many diffs)
41 mouse 59013 Hnrnph1 heterogeneous nuclear ribon... XM_017314691.1 87.6% 95.9% (many diffs)
42 mouse 59013 Hnrnph1 heterogeneous nuclear ribon... XM_017314692.1 86.1% 94.4% (many diffs)
43 mouse 59013 Hnrnph1 heterogeneous nuclear ribon... XM_017314693.1 86.1% 94.4% (many diffs)
44 mouse 59013 Hnrnph1 heterogeneous nuclear ribon... XM_006533881.2 85.5% 93.5% (many diffs)
45 mouse 59013 Hnrnph1 heterogeneous nuclear ribon... XM_006533883.2 83.5% 91.9% (many diffs)
46 mouse 59013 Hnrnph1 heterogeneous nuclear ribon... NM_001347487.1 82.3% 89.4% (many diffs)
47 mouse 59013 Hnrnph1 heterogeneous nuclear ribon... XM_006533876.3 82.3% 89.4% (many diffs)
48 mouse 59013 Hnrnph1 heterogeneous nuclear ribon... XM_006533877.3 82.3% 89.4% (many diffs)
49 mouse 59013 Hnrnph1 heterogeneous nuclear ribon... XM_017314694.1 82% 90.4% (many diffs)
50 mouse 59013 Hnrnph1 heterogeneous nuclear ribon... XM_006533878.1 80.9% 87.9% (many diffs)
51 mouse 59013 Hnrnph1 heterogeneous nuclear ribon... XM_006533879.1 80.4% 87.1% (many diffs)
52 mouse 59013 Hnrnph1 heterogeneous nuclear ribon... XM_006533880.2 78.5% 85.6% (many diffs)
53 mouse 59013 Hnrnph1 heterogeneous nuclear ribon... XM_017314696.1 48.7% 53.2% (many diffs)
54 mouse 59013 Hnrnph1 heterogeneous nuclear ribon... XM_017314697.1 47.2% 51.6% (many diffs)
55 mouse 59013 Hnrnph1 heterogeneous nuclear ribon... XM_006533884.2 45.5% 48.8% (many diffs)
56 mouse 59013 Hnrnph1 heterogeneous nuclear ribon... XM_017314695.1 45.5% 48.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1416
ORF length:
1347
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GATGCTGAGC ACGGAAGGCA GGGAGGGGTT CGTGGTGAAG GTCAGGGGCC
121TACCCTGGTC CTGCTCAGCC GATGAAGTGA TGCGCTTCTT CTCTGATTGC AAGATCCAAA
181ATGGCACATC AGGTATTCGT TTCATCTACA CCAGAGAAGG CAGACCAAGT GGTGAAGCAT
241TTGTTGAACT TGAATCTGAA GAGGAAGTGA AATTGGCTTT GAAGAAGGAC AGAGAAACCA
301TGGGACACAG ATACGTTGAA GTATTCAAGT CTAACAGTGT TGAAATGGAT TGGGTGTTGA
361AGCATACAGG TCCGAATAGC CCTGATACTG CCAACGATGG CTTCGTCCGG CTTAGAGGAC
421TCCCATTTGG CTGTAGCAAG GAAGAGATTG TTCAGTTCTT TTCAGGTTTG GAAATTGTGC
481CAAATGGGAT GACACTGCCA GTGGACTTTC AGGGGCGAAG CACAGGGGAA GCCTTTGTGC
541AGTTTGCTTC ACAGGAGATA GCTGAGAAGG CCTTAAAGAA ACACAAGGAA AGAATAGGGC
601ACAGGTACAT TGAGATCTTC AAGAGTAGCC GAGCTGAAGT TCGAACCCAC TATGATCCCC
661CTCGAAAGCT CATGGCTATG CAGCGGCCAG GTCCCTATGA TAGGCCGGGG GCTGGCAGAG
721GGTATAATAG CATTGGCAGA GGAGCTGGGT TTGAAAGGAT GAGGCGTGGT GCCTATGGTG
781GAGGGTATGG AGGCTATGAT GACTATGGTG GCTATAATGA TGGATATGGC TTTGGGTCTG
841ATAGATTTGG AAGAGACCTC AATTACTGTT TTTCAGGAAT GTCTGATCAT AGATACGGAG
901ATGGTGGGTC CAGTTTCCAG AGCACCACAG GGCACTGTGT ACACATGAGG GGGTTACCTT
961ACAGAGCCAC TGAGAATGAT ATTTATAATT TCTTCTCACC TCTTAATCCC ATGAGAGTAC
1021ATATTGAAAT TGGACCCGAT GGCAGAGTTA CCGGTGAGGC AGATGTTGAA TTTGCTACTC
1081ATGAAGATGC TGTGGCAGCT ATGGCAAAAG ACAAAGCTAA TATGCAACAC AGATATGTGG
1141AGCTCTTCTT AAATTCTACT GCAGGAACAA GTGGGGGTGC TTACGATCAC AGCTATGTAG
1201AACTTTTTTT GAATTCTACA GCAGGGGCAA GTGGTGGCGC TTATGGTAGC CAAATGATGG
1261GAGGGATGGG CTTATCCAAC CAGTCTAGTT ATGGAGGTCC TGCTAGCCAG CAGCTGAGTG
1321GTGGTTATGG AGGTGGTTAT GGTGGTCAGA GCAGTATGAG TGGATATGAC CAAGTTCTGC
1381AGGAAAACTC CAGTGACTAT CAGTCAAACC TTGCTTTGCC AACTTTCTTG TACAAAGTtg
1441gcattataag aaagcattgc ttatcaattt gttgcaacga ac

Download FASTA (ORF) (Full)