Construct: ORF ccsbBroadEn_06416

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014532.1_s300c1, BRDN0000386135
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
HTR1D (3352)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 3352 HTR1D 5-hydroxytryptamine recepto... NM_000864.4 99.9% 100% 585C>T
2 mouse 15552 Htr1d 5-hydroxytryptamine (seroto... NM_001285482.1 85% 90.1% (many diffs)
3 mouse 15552 Htr1d 5-hydroxytryptamine (seroto... NM_001285483.1 85% 90.1% (many diffs)
4 mouse 15552 Htr1d 5-hydroxytryptamine (seroto... NM_001285484.1 85% 90.1% (many diffs)
5 mouse 15552 Htr1d 5-hydroxytryptamine (seroto... NM_008309.5 85% 90.1% (many diffs)
6 mouse 15552 Htr1d 5-hydroxytryptamine (seroto... XM_006538577.3 85% 90.1% (many diffs)
7 mouse 15552 Htr1d 5-hydroxytryptamine (seroto... XM_006538578.2 85% 90.1% (many diffs)
8 mouse 15552 Htr1d 5-hydroxytryptamine (seroto... XM_017319986.2 85% 90.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1197
ORF length:
1131
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGTC CCCACTGAAC CAGTCAGCAG AAGGCCTTCC CCAGGAGGCC TCCAACAGAT
121CCCTGAATGC CACAGAAACC TCAGAGGCTT GGGATCCCAG GACCCTCCAG GCGCTCAAGA
181TCTCCCTTGC CGTGGTCCTT TCCGTCATCA CACTGGCCAC AGTCCTCTCC AATGCCTTTG
241TACTCACCAC CATCTTACTC ACCAGGAAGC TCCACACCCC TGCCAACTAC CTGATTGGCT
301CCCTGGCCAC CACCGACCTC TTGGTTTCCA TCTTGGTAAT GCCCATCAGC ATCGCCTATA
361CCATCACCCA CACCTGGAAC TTTGGCCAAA TCTTGTGTGA CATCTGGCTG TCCTCTGACA
421TCACGTGCTG CACAGCCTCC ATCCTGCATC TCTGTGTCAT TGCTCTGGAC AGGTACTGGG
481CAATCACAGA TGCCCTGGAA TACAGTAAAC GCAGGACGGC TGGCCACGCG GCCACCATGA
541TCGCCATTGT CTGGGCCATC TCCATCTGCA TCTCCATCCC CCCGCTCTTC TGGCGGCAGG
601CCAAGGCCCA GGAGGAGATG TCGGACTGTC TGGTGAACAC CTCTCAGATT TCCTACACCA
661TCTACTCCAC CTGTGGGGCC TTCTACATTC CCTCGGTGTT GCTCATCATC CTATATGGCC
721GGATCTACCG GGCTGCCCGG AACCGCATCC TGAATCCACC CTCACTCTAT GGGAAGCGCT
781TCACCACGGC CCACCTCATC ACAGGCTCTG CCGGGTCCTC GCTCTGCTCG CTCAACTCCA
841GCCTCCATGA GGGGCACTCG CACTCGGCTG GCTCCCCTCT CTTTTTCAAC CACGTGAAAA
901TCAAGCTTGC TGACAGTGCC CTGGAACGCA AGAGGATTTC TGCTGCTCGA GAAAGGAAAG
961CCACTAAAAT CCTGGGCATC ATTCTGGGGG CCTTTATCAT CTGCTGGCTG CCCTTCTTCG
1021TGGTGTCTCT GGTCCTCCCC ATCTGCCGGG ACTCCTGCTG GATCCACCCG GCGCTCTTTG
1081ACTTCTTCAC CTGGCTAGGC TATTTAAACT CCCTCATCAA TCCAATAATC TACACTGTGT
1141TTAATGAAGA GTTTCGGCAA GCTTTTCAGA AAATTGTCCC TTTCCGGAAG GCCTCCTACC
1201CAACTTTCTT GTACAAAGTt ggcattataa gaaagcattg cttatcaatt tgttgcaacg
1261aac

Download FASTA (ORF) (Full)