Construct: ORF ccsbBroadEn_06431

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006756.1_s300c1, BRDN0000392571
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
IFNAR2 (3455)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 3455 IFNAR2 interferon alpha and beta r... NM_000874.5 99.7% 99.3% 28T>G;853G>A
2 human 3455 IFNAR2 interferon alpha and beta r... NM_207584.3 99.7% 99.3% 28T>G;853G>A
3 human 3455 IFNAR2 interferon alpha and beta r... NM_001289126.1 71.5% 71.2% 28T>G;712_714delTTT;717_718ins279
4 human 3455 IFNAR2 interferon alpha and beta r... NM_001289128.1 71.5% 71.2% 28T>G;712_714delTTT;717_718ins279
5 human 3455 IFNAR2 interferon alpha and beta r... NM_001289125.1 60.4% 54.5% (many diffs)
6 human 3455 IFNAR2 interferon alpha and beta r... NM_207585.2 60.4% 54.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1059
ORF length:
993
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGCT TTTGAGCCAG AATGCCTTCA TCGTCAGATC ACTTAATTTG GTTCTCATGG
121TGTATATCAG CCTCGTGTTT GGTATTTCAT ATGATTCGCC TGATTACACA GATGAATCTT
181GCACTTTCAA GATATCATTG CGAAATTTCC GGTCCATCTT ATCATGGGAA TTAAAAAACC
241ACTCCATTGT ACCAACTCAC TATACATTGC TGTATACAAT CATGAGTAAA CCAGAAGATT
301TGAAGGTGGT TAAGAACTGT GCAAATACCA CAAGATCATT TTGTGACCTC ACAGATGAGT
361GGAGAAGCAC ACACGAGGCC TATGTCACCG TCCTAGAAGG ATTCAGCGGG AACACAACGT
421TGTTCAGTTG CTCACACAAT TTCTGGCTGG CCATAGACAT GTCTTTTGAA CCACCAGAGT
481TTGAGATTGT TGGTTTTACC AACCACATTA ATGTGATGGT GAAATTTCCA TCTATTGTTG
541AGGAAGAATT ACAGTTTGAT TTATCTCTCG TCATTGAAGA ACAGTCAGAG GGAATTGTTA
601AGAAGCATAA ACCCGAAATA AAAGGAAACA TGAGTGGAAA TTTCACCTAT ATCATTGACA
661AGTTAATTCC AAACACGAAC TACTGTGTAT CTGTTTATTT AGAGCACAGT GATGAGCAAG
721CAGTAATAAA GTCTCCCTTA AAATGCACCC TCCTTCCACC TGGCCAGGAA TCAGAATCAG
781CAGAATCTGC CAAAATAGGA GGAATAATTA CTGTGTTTTT GATAGCATTG GTCTTGACAA
841GCACCATAGT GACACTGAAA TGGATTGGTT ATATATGCTT AAGAAATAGC CTCCCCAAAG
901TCTTGAGGCA AGGTCTCACT AAGGGCTGGA ATGCAGTGGC TATTCACAGG TGCAGTCATA
961ATGCACTACA GTCTGAAACT CCTGAGCTCA AACAGTCGTC CTGCCTAAGC TTCCCCAGTA
1021GCTGGGATTA CAAGCGTGCA TCCCTGTGCC CCAGTGATTA CCCAACTTTC TTGTACAAAG
1081Ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac

Download FASTA (ORF) (Full)