Construct: ORF ccsbBroadEn_06434
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF013995.1_s300c1, BRDN0000386825
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- JCHAIN (3512)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 3512 | JCHAIN | joining chain of multimeric... | NM_144646.4 | 100% | 100% |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 543
- ORF length:
- 477
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag 61 ttgAGATGAA GAACCATTTG CTTTTCTGGG GAGTCCTGGC GGTTTTTATT AAGGCTGTTC 121 ATGTGAAAGC CCAAGAAGAT GAAAGGATTG TTCTTGTTGA CAACAAATGT AAGTGTGCCC 181 GGATTACTTC CAGGATCATC CGTTCTTCCG AAGATCCTAA TGAGGACATT GTGGAGAGAA 241 ACATCCGAAT TATTGTTCCT CTGAACAACA GGGAGAATAT CTCTGATCCC ACCTCACCAT 301 TGAGAACCAG ATTTGTGTAC CATTTGTCTG ACCTCTGTAA AAAATGTGAT CCTACAGAAG 361 TGGAGCTGGA TAATCAGATA GTTACTGCTA CCCAGAGCAA TATCTGTGAT GAAGACAGTG 421 CTACAGAGAC CTGCTACACT TATGACAGAA ACAAGTGCTA CACAGCTGTG GTCCCACTCG 481 TATATGGTGG TGAGACCAAA ATGGTGGAAA CAGCCTTAAC CCCAGATGCC TGCTATCCTG 541 actacccaac tttcttgtac aaagttggca ttataagaaa gcattgctta tcaatttgtt 601 gcaacgaac