Construct: ORF ccsbBroadEn_06442
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF012880.1_s300c1, BRDN0000385939
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CXCR1 (3577)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 3577 | CXCR1 | C-X-C motif chemokine recep... | NM_000634.3 | 99.7% | 99.1% | 8A>T;92T>G;1003C>T |
| 2 | human | 3579 | CXCR2 | C-X-C motif chemokine recep... | NM_001168298.2 | 81.6% | 75.2% | (many diffs) |
| 3 | human | 3579 | CXCR2 | C-X-C motif chemokine recep... | NM_001557.4 | 81.6% | 75.2% | (many diffs) |
| 4 | human | 3579 | CXCR2 | C-X-C motif chemokine recep... | XM_005246530.3 | 81.6% | 75.2% | (many diffs) |
| 5 | human | 3579 | CXCR2 | C-X-C motif chemokine recep... | XM_017003990.1 | 81.6% | 75.2% | (many diffs) |
| 6 | human | 3579 | CXCR2 | C-X-C motif chemokine recep... | XM_017003991.1 | 81.6% | 75.2% | (many diffs) |
| 7 | human | 3579 | CXCR2 | C-X-C motif chemokine recep... | XM_017003992.1 | 81.6% | 75.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1116
- ORF length:
- 1050
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTC AATTATTACA GATCCACAGA TGTGGGATTT TGATGATCTA AATTTCACTG 121 GCATGCCACC TGCAGATGAA GATTACAGCC CCTGTAGGCT AGAAACTGAG ACACTCAACA 181 AGTATGTTGT GATCATCGCC TATGCCCTAG TGTTCCTGCT GAGCCTGCTG GGAAACTCCC 241 TGGTGATGCT GGTCATCTTA TACAGCAGGG TCGGCCGCTC CGTCACTGAT GTCTACCTGC 301 TGAACCTGGC CTTGGCCGAC CTACTCTTTG CCCTGACCTT GCCCATCTGG GCCGCCTCCA 361 AGGTGAATGG CTGGATTTTT GGCACATTCC TGTGCAAGGT GGTCTCACTC CTGAAGGAAG 421 TCAACTTCTA CAGTGGCATC CTGCTGTTGG CCTGCATCAG TGTGGACCGT TACCTGGCCA 481 TTGTCCATGC CACACGCACA CTGACCCAGA AGCGTCACTT GGTCAAGTTT GTTTGTCTTG 541 GCTGCTGGGG ACTGTCTATG AATCTGTCCC TGCCCTTCTT CCTTTTCCGC CAGGCTTACC 601 ATCCAAACAA TTCCAGTCCA GTTTGCTATG AGGTCCTGGG AAATGACACA GCAAAATGGC 661 GGATGGTGTT GCGGATCCTG CCTCACACCT TTGGCTTCAT CGTGCCGCTG TTTGTCATGC 721 TGTTCTGCTA TGGATTCACC CTGCGTACAC TGTTTAAGGC CCACATGGGG CAGAAGCACC 781 GAGCCATGAG GGTCATCTTT GCTGTCGTCC TCATCTTCCT GCTTTGCTGG CTGCCCTACA 841 ACCTGGTCCT GCTGGCAGAC ACCCTCATGA GGACCCAGGT GATCCAGGAG AGCTGTGAGC 901 GCCGCAACAA CATCGGCCGG GCCCTGGATG CCACTGAGAT TCTGGGATTT CTCCATAGCT 961 GCCTCAACCC CATCATCTAC GCCTTCATCG GCCAAAATTT TCGCCATGGA TTCCTCAAGA 1021 TCCTGGCTAT GCATGGCCTG GTCAGCAAGG AGTTCTTGGC ACGTCATTGT GTTACCTCCT 1081 ACACTTCTTC GTCTGTCAAT GTCTCTTCCA ACCTCTGCCC AACTTTATTG TACAAAGTtg 1141 gcattataag aaagcattgc ttatcaattt gttgcaacga ac