Construct: ORF ccsbBroadEn_06514

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF018021.1_s300c1, BRDN0000387058
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RPSA (3921)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 3921 RPSA ribosomal protein SA NM_002295.6 99.8% 99.6% 641A>G
2 human 388524 RPSAP58 ribosomal protein SA pseudo... NM_001355283.2 99.4% 98.6% (many diffs)
3 human 388524 RPSAP58 ribosomal protein SA pseudo... NM_001355287.2 99.4% 98.6% (many diffs)
4 human 3921 RPSA ribosomal protein SA NM_001304288.2 98.2% 98% 252_266del;656A>G
5 human 204010 RPSAP52 ribosomal protein SA pseudo... NR_026825.2 70.2% (many diffs)
6 human 653162 RPSAP9 ribosomal protein SA pseudo... NR_026890.1 59.8% (many diffs)
7 mouse 16785 Rpsa ribosomal protein SA NM_011029.4 88.8% 98.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
951
ORF length:
885
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGTC CGGAGCCCTT GATGTCCTGC AAATGAAGGA GGAGGATGTC CTTAAGTTCC
121TTGCAGCAGG AACCCACTTA GGTGGCACCA ATCTTGACTT CCAGATGGAA CAGTACATCT
181ATAAAAGGAA AAGTGATGGC ATCTATATCA TAAATCTCAA GAGGACCTGG GAGAAGCTTC
241TGCTGGCAGC TCGTGCAATT GTTGCCATTG AAAACCCTGC TGATGTCAGT GTTATATCCT
301CCAGGAATAC TGGCCAGAGG GCTGTGCTGA AGTTTGCTGC TGCCACTGGA GCCACTCCAA
361TTGCTGGCCG CTTCACTCCT GGAACCTTCA CTAACCAGAT CCAGGCAGCC TTCCGGGAGC
421CACGGCTTCT TGTGGTTACT GACCCCAGGG CTGACCACCA GCCTCTCACG GAGGCATCTT
481ATGTTAACCT ACCTACCATT GCGCTGTGTA ACACAGATTC TCCTCTGCGC TATGTGGACA
541TTGCCATCCC ATGCAACAAC AAGGGAGCTC ACTCAGTGGG TTTGATGTGG TGGATGCTGG
601CTCGGGAAGT TCTGCGCATG CGTGGCACCA TTTCCCGTGA ACACCCATGG GAGGTCATGC
661CTGATCTGTA CTTCTACAGA GATCCTGAAG AGATTGAAAA AGAAGGGCAG GCTGCTGCTG
721AGAAGGCAGT GACCAAGGAG GAATTTCAGG GTGAATGGAC TGCTCCCGCT CCTGAGTTCA
781CTGCTACTCA GCCTGAGGTT GCAGACTGGT CTGAAGGTGT ACAGGTGCCC TCTGTGCCTA
841TTCAGCAATT CCCTACTGAA GACTGGAGCG CTCAGCCTGC CACGGAAGAC TGGTCTGCAG
901CTCCCACTGC TCAGGCCACT GAATGGGTAG GAGCAACCAC TGACTGGTCT TACCCAACTT
961TCTTGTACAA AGTtggcatt ataagaaagc attgcttatc aatttgttgc aacgaac

Download FASTA (ORF) (Full)

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