Construct: ORF ccsbBroadEn_06527

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005173.1_s300c1, BRDN0000457329
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
LLGL2 (3993)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 3993 LLGL2 LLGL scribble cell polarity... NM_001031803.2 99.8% 99.8% (many diffs)
2 human 3993 LLGL2 LLGL scribble cell polarity... XM_017024626.1 99.8% 99.8% (many diffs)
3 human 3993 LLGL2 LLGL scribble cell polarity... XM_017024627.1 99.7% 99.6% (many diffs)
4 human 3993 LLGL2 LLGL scribble cell polarity... XM_011524802.1 99.4% 99.4% (many diffs)
5 human 3993 LLGL2 LLGL scribble cell polarity... XM_017024625.1 99.3% 99.2% (many diffs)
6 human 3993 LLGL2 LLGL scribble cell polarity... NM_004524.3 97.5% 96.2% (many diffs)
7 human 3993 LLGL2 LLGL scribble cell polarity... XM_017024630.1 97.5% 96.2% (many diffs)
8 human 3993 LLGL2 LLGL scribble cell polarity... XM_017024629.1 97.2% 96% (many diffs)
9 human 3993 LLGL2 LLGL scribble cell polarity... XM_017024628.1 97.1% 95.9% (many diffs)
10 human 3993 LLGL2 LLGL scribble cell polarity... XM_017024631.1 95.7% 95.5% (many diffs)
11 human 3993 LLGL2 LLGL scribble cell polarity... XR_001752508.1 83.1% (many diffs)
12 human 3993 LLGL2 LLGL scribble cell polarity... XR_002958003.1 79.8% (many diffs)
13 human 3993 LLGL2 LLGL scribble cell polarity... XR_002957999.1 79.6% (many diffs)
14 human 3993 LLGL2 LLGL scribble cell polarity... XR_002958002.1 78.8% (many diffs)
15 human 3993 LLGL2 LLGL scribble cell polarity... XR_002958000.1 78.2% (many diffs)
16 human 3993 LLGL2 LLGL scribble cell polarity... XR_002958001.1 77.4% (many diffs)
17 human 3993 LLGL2 LLGL scribble cell polarity... XR_002958004.1 77.2% (many diffs)
18 human 3993 LLGL2 LLGL scribble cell polarity... XR_002958005.1 77.1% (many diffs)
19 human 3993 LLGL2 LLGL scribble cell polarity... NM_001015002.1 34.6% 34.1% (many diffs)
20 human 3993 LLGL2 LLGL scribble cell polarity... XM_024450747.1 34.6% 34.1% (many diffs)
21 mouse 217325 Llgl2 lethal giant larvae homolog... NM_145438.2 86.3% 90.4% (many diffs)
22 mouse 217325 Llgl2 lethal giant larvae homolog... XM_006533083.2 86.2% 90.3% (many diffs)
23 mouse 217325 Llgl2 lethal giant larvae homolog... XM_006533084.2 86.1% 90.1% (many diffs)
24 mouse 217325 Llgl2 lethal giant larvae homolog... XM_006533086.2 85.3% 89.3% (many diffs)
25 mouse 217325 Llgl2 lethal giant larvae homolog... XM_006533085.2 85.2% 89.4% (many diffs)
26 mouse 217325 Llgl2 lethal giant larvae homolog... XM_006533087.2 85.1% 89.2% (many diffs)
27 mouse 217325 Llgl2 lethal giant larvae homolog... NM_001252532.1 84.4% 88.3% (many diffs)
28 mouse 217325 Llgl2 lethal giant larvae homolog... XR_388422.3 78.6% (many diffs)
29 mouse 217325 Llgl2 lethal giant larvae homolog... XR_388421.2 72.8% (many diffs)
30 mouse 217325 Llgl2 lethal giant larvae homolog... XR_388418.2 66.5% (many diffs)
31 mouse 217325 Llgl2 lethal giant larvae homolog... XR_388420.2 66.2% (many diffs)
32 mouse 217325 Llgl2 lethal giant larvae homolog... XR_388419.2 62.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
3126
ORF length:
3060
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAG GCGGTTCCTG AGGCCAGGGC ATGACCCTGT GCGGGAGAGG CTCAAGCGGG
121ACCTGTTCCA GTTTAACAAG ACGGTGGAGC ATGGCTTCCC GCACCAGCCC AGCGCCCTCG
181GCTACAGCCC GTCCCTGCGC ATCCTGGCCA TCGGCACCCG TTCTGGAGCC ATCAAGCTCT
241ACGGAGCCCC AGGCGTGGAG TTCATGGGGC TGCACCAGGA GAACAACGCT GTGACGCAGA
301TCCACCTCCT GCCCGGCCAG TGCCAGCTGG TCACCCTGCT GGATGACAAC AGCCTGCACC
361TTTGGAGCCT GAAGGTCAAG GGCGGGGCAT CGGAGCTGCA GGAGGATGAG AGCTTCACAC
421TGCGTGGACC CCCAGGGGCT GCCCCCAGTG CCACACAGAT CACCGTGGTC CTGCCACATT
481CCTCCTGCGA GCTGCTCTAC CTGGGCACCG AGAGTGGCAA CGTGTTTGTG GTGCAGCTGC
541CAGCTTTTCG TGCGCTGGAG GACCGGACCA TCAGCTCGGA CGCGGTGCTG CAGCGGTTGC
601CAGAGGAGGC CCGCCACCGG CGTGTGTTCG AGATGGTGGA GGCACTGCAG GAGCACCCTC
661GAGACCCCAA CCAGATCCTG ATCGGCTACA GCCGAGGCCT CGTTGTCATC TGGGACCTAC
721AGGGCAGCCG CGTGCTCTAC CACTTCCTCA GCAGCCAGCA ACTGGAGAAC ATCTGGTGGC
781AGCGGGACGG CCGCCTGCTC GTCAGCTGTC ACTCTGACGG CAGCTACTGC CAGTGGCCCG
841TGTCCAGCGA AGCCCAGCAA CCAGAGCCCC TCCGCAGCCT CGTGCCTTAC GGTCCCTTTC
901CTTGCAAAGC GATTACCAGA ATCCTCTGGC TGACCACTAG GCAGGGGTTG CCCTTCACCA
961TCTTCCAGGG TGGCATGCCA CGGGCCAGCT ACGGGGACCG CCACTGCATC TCAGTGATCC
1021ACGATGGCCA GCAGACGGCC TTCGACTTCA CCTCCCGTGT CATCGGCTTC ACTGTCCTCA
1081CAGAGGCAGA CCCTGCAGCC ACCTTTGACG ACCCCTATGC CCTGGTGGTG CTGGCTGAGG
1141AGGAGCTGGT GGTGATTGAC CTGCAGACAG CAGGCTGGCC ACCGGTCCAG CTGCCCTACC
1201TGGCTTCTCT GCACTGTTCC GCCATCACCT GCTCTCACCA CGTCTCCAAC ATCCCGCTGA
1261AGCTGTGGGA GCGGATCATT GCCGCCGGCA GCCGGCAGAA CGCACACTTC TCCACCATGG
1321AGTGGCCAAT TGATGGTGGC ACCAGCCTGA CCCCAGCCCC ACCCCAGAGG GACCTGCTGC
1381TCACAGGGCA CGAGGACGGC ACGGTGCGGT TCTGGGATGC CTCGGGTGTC TGCCTGCGGC
1441TGCTCTACAA ACTCAGCACT GTGCGCGTGT TCCTCACCGA CACGGACCCC AACGAGAACC
1501TCAGTGCCCA GGGCGAGGAC GAGTGGCCCC CACTCCGCAA GGTGGGCTCC TTTGACCCCT
1561ACAGTGATGA CCCCCGGCTG GGCATCCAGA AGATCTTCCT CTGCAAGTAC AGCGGCTACC
1621TGGCTGTGGC AGGCACGGCA GGGCAGGTGC TGGTACTGGA ACTGAATGAC GAGGCAGCGG
1681AGCAGGCTGT GGAGCAGGTG GAGGCCGACC TGCTGCAGGA CCAAGAGGGC TACCGCTGGA
1741AGGGGCACGA GCGCCTGGCA GCCCGCTCAG GGCCCGTGCG CTTTGAGCCT GGCTTTCAGC
1801CCTTCGTGTT GGTGCAGTGT CAGCCCCCGG CTGTGGTCAC CTCCTTGGCC CTGCACTCTG
1861AGTGGCGGCT CGTGGCCTTC GGCACCAGCC ATGGCTTTGG CCTCTTTGAC CACCAGCAGC
1921GGCGGCAGGT CTTTGTTAAG TGCACACTGC ACCCCAGTGA CCAGCTGGCC TTGGAGGGCC
1981CACTCTCCCG CGTCAAGTCC CTCAAGAAGT CCTTGCGTCA GTCATTCCGC CGGATGCGTC
2041GGAGCCGGGT GTCCAGCCGG AAGCGGCACC CAGCTGGCCC CCCAGGAGAG GCACAGGAGG
2101GGAGTGCCAA GGCTGAGCGG CCAGGCCTCC AGAACATGGA GCTGGCGCCT GTGCAGCGCA
2161AGATCGAGGC TCGCTCGGCA GAGGACTCCT TCACAGGCTT CGTCCGGACC CTGTACTTTG
2221CTGACACCTA CCTGAAGGAC AGCTCCCGGC ACTGCCCCTC GCTGTGGGCT GGCACCAATG
2281GGGGCACCAT CTATGCCTTC TCCCTGCGTG TGCCTCCCGC CGAGCGGAGA ATGGATGAGT
2341CTGTGCGGGC AGAGCAGGCC AAGGAGATCC AGCTGATGCA CCGGGCGCCG GTGGTGGGCA
2401TCCTGGTGCT CGACGGACAC AGCGTACCCC TTCCTGAGCC CCTCGAAGTG GCCCATGATC
2461TGTCGAAGAG CCCTGACATG CAGGGAAGCC ACCAGCTGCT CGTCGTATCA GAGGAGCAGT
2521TCAAGGTGTT CACGCTGCCC AAGGTGAGTG CCAAGCTGAA GTTGAAGCTG ACGGCCCTGG
2581AGGGCTCAAG AGTGCGGCGG GTCAGCGTGG CCCACTTCGG CAGTCGTCGA GCCGAGGACT
2641ACGGGGAGCA CCACCTGGCA GTCCTTACCA ACCTGGGCGA CATCCAGGTG GTCTCGCTGC
2701CCCTGCTCAA GCCCCAGGTG CGCTACAGCT GCATCCGCCG GGAGGACGTC AGTGGCATCG
2761CCTCCTGCGT CTTCACCAAA TATGGCCAAG GCTTCTACCT GATCTCACCC TCGGAGTTTG
2821AGCGCTTCTC TCTCTCCACC AAGTGGCTGG TGGAGCCCCG GTGTCTGGTG GATTCAGCAG
2881AAACCAAGAA CCACCGCCCT GGTAACGGTG CGGGCCCCAA GAAGGCCCCG AGCCGAGCCA
2941GGAACTCAGG GACTCAGAGT GATGGCGAGG AGAAGCAGCC CGGCCTGGTG ATGGAGCGCG
3001CTCTGCTCAG TGATGAGAGA GTCCTGAAGG AAATCCAGAG CACACTGGAG GGAGACCGCG
3061GGAGCGGCAA CTGGCGTTCA CATCGAGCGG CCGTGGGGTG CAGCCTCAGC AATGGCGGAG
3121CAGAGTGCCC AACTTTCTTG TACAAAGTTG Gcattataag aaagcattgc ttatcaattt
3181gttgcaacga ac

Download FASTA (ORF) (Full)

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