Construct: ORF ccsbBroadEn_06585
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008182.1_s300c1, BRDN0000394529
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- MLN (4295)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 4295 | MLN | motilin | NM_002418.3 | 99.7% | 99.1% | 44T>C |
| 2 | human | 4295 | MLN | motilin | NM_001040109.2 | 98.8% | 97.3% | 44T>C;336_337insGCA |
| 3 | human | 4295 | MLN | motilin | NM_001184698.2 | 93.6% | 90.4% | 44T>C;316_317ins21 |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 414
- ORF length:
- 345
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGTATCCCGT AAGGCTGTGG CTGCTCTGCT GGTGGTGCAT GCAGCTGCCA 121 TGCTGGCCTC CCAGACGGAA GCCTTCGTCC CCATCTTCAC CTATGGCGAA CTCCAGAGGA 181 TGCAGGAAAA GGAACGGAAT AAAGGGCAAA AGAAATCCCT GAGTGTATGG CAGAGGTCTG 241 GGGAGGAAGG TCCTGTAGAC CCTGCGGAGC CCATCAGGGA AGAAGAAAAC GAAATGATCA 301 AGCTGACTGC TCCTCTGGAA ATTGGAATGA GGATGAACTC CAGACAGCTG GAAAAGTACC 361 CGGCCACCCT GGAAGGGCTG CTGAGTGAGA TGCTTCCCCA GCATGCAGCC AAGTTGCCAA 421 CTTTCTTGTA CAAAGTtggc attataagaa agcattgctt atcaatttgt tgcaacgaac