Construct: ORF ccsbBroadEn_06604
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006546.1_s300c1, BRDN0000386131
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- MUC7 (4589)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 4589 | MUC7 | mucin 7, secreted | NM_001145006.1 | 99.9% | 99.7% | 1001C>T |
| 2 | human | 4589 | MUC7 | mucin 7, secreted | NM_001145007.1 | 99.9% | 99.7% | 1001C>T |
| 3 | human | 4589 | MUC7 | mucin 7, secreted | NM_152291.3 | 99.9% | 99.7% | 1001C>T |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1197
- ORF length:
- 1131
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAA AACTCTGCCG CTGTTTGTGT GCATCTGTGC ACTGAGTGCT TGCTTCTCGT 121 TCAGTGAAGG TCGAGAAAGG GATCATGAAC TACGTCACAG AAGGCATCAT CACCAATCAC 181 CCAAATCTCA CTTTGAATTA CCACATTATC CTGGACTGCT AGCTCACCAG AAGCCGTTCA 241 TTAGAAAGTC CTATAAATGT CTGCACAAAC GCTGTAGGCC TAAGCTTCCA CCTTCACCTA 301 ATAACCCCCC CAAATTCCCA AATCCTCACC AGCCACCTAA ACATCCAGAT AAAAATAGCA 361 GTGTGGTCAA CCCTACCTTA GTGGCTACAA CCCAAATTCC ATCTGTGACT TTCCCATCAG 421 CTTCCACCAA AATTACTACC CTTCCAAATG TGACTTTTCT TCCCCAGAAT GCCACCACCA 481 TATCTTCAAG AGAAAATGTT AACACAAGCT CTTCTGTAGC TACATTAGCA CCAGTGAATT 541 CCCCAGCTCC ACAAGACACC ACAGCTGCCC CACCCACACC TTCTGCAACT ACACCAGCTC 601 CACCATCTTC CTCAGCTCCA CCAGAGACCA CAGCTGCCCC ACCCACACCT TCTGCAACTA 661 CACAAGCTCC ACCATCTTCC TCAGCTCCAC CAGAGACCAC AGCTGCCCCA CCCACACCTC 721 CTGCAACTAC ACCAGCTCCA CCATCTTCCT CAGCTCCACC AGAGACCACA GCTGCCCCAC 781 CCACACCTTC TGCAACTACA CCAGCTCCAC TATCTTCCTC AGCTCCACCA GAGACCACAG 841 CTGTCCCACC CACACCTTCT GCAACTACCC TAGACCCATC ATCCGCCTCA GCTCCACCAG 901 AGACCACAGC TGCCCCACCC ACACCTTCTG CAACTACACC AGCTCCACCG TCTTCCCCAG 961 CTCCACAAGA GACCACAGCT GCCCCAATTA CCACACCTAA TTCTTCCCCA ACTACTCTTG 1021 CACCTGACAC TTCTGAAACT TCAGCTGCAC CCACACACCA GACTATTACT TCGGTCACTA 1081 CTCAAACTAC TACTACTAAA CAACCAACTT CAGCTCCTGG CCAAAATAAA ATTTCTCGAT 1141 TTCTTTTATA TATGAAGAAT CTACTAAACA GAATTATTGA CGACATGGTG GAGCAATACC 1201 CAACTTTCTT GTACAAAGTt ggcattataa gaaagcattg cttatcaatt tgttgcaacg 1261 aac