Construct: ORF ccsbBroadEn_06747

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003137.1_s300c1, BRDN0000389805
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
POLD1 (5424)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 5424 POLD1 DNA polymerase delta 1, cat... NM_001256849.1 99.9% 99.9% 324G>A;356G>A
2 human 5424 POLD1 DNA polymerase delta 1, cat... NM_002691.4 99.9% 99.9% 324G>A;356G>A
3 human 5424 POLD1 DNA polymerase delta 1, cat... XM_011527038.1 99.9% 99.9% 324G>A;356G>A
4 human 5424 POLD1 DNA polymerase delta 1, cat... XM_017026881.1 99.9% 99.9% 324G>A;356G>A
5 human 5424 POLD1 DNA polymerase delta 1, cat... XM_005259008.4 97.7% 97.7% 324G>A;356G>A;2080_2081ins72
6 human 5424 POLD1 DNA polymerase delta 1, cat... XM_017026882.2 97.7% 97.7% 324G>A;356G>A;2080_2081ins72
7 human 5424 POLD1 DNA polymerase delta 1, cat... NM_001308632.1 97.6% 97.6% 324G>A;356G>A;1775_1852del
8 human 5424 POLD1 DNA polymerase delta 1, cat... NR_046402.2 93.5% (many diffs)
9 human 5424 POLD1 DNA polymerase delta 1, cat... XR_935835.2 63.8% (many diffs)
10 mouse 18971 Pold1 polymerase (DNA directed), ... NM_011131.3 84.4% 89.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
3387
ORF length:
3321
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGA TGGCAAGCGG CGGCCAGGCC CAGGGCCCGG GGTGCCCCCA AAGCGGGCCC
121GTGGGGGCCT CTGGGATGAT GATGATGCAC CTCGGCCATC CCAATTCGAG GAGGACCTGG
181CACTGATGGA GGAGATGGAG GCAGAACACA GGCTGCAGGA GCAGGAGGAG GAGGAGCTGC
241AGTCAGTCCT GGAGGGGGTT GCAGACGGGC AGGTCCCACC ATCAGCCATA GATCCTCGCT
301GGCTTCGGCC CACACCACCA GCGCTGGACC CCCAGACAGA GCCCCTCATC TTCCAACAGT
361TGGAGATTGA CCATTATGTG GGCCCAGCAC AGCCTGTGCC TGGGGGGCCC CCACCATCCC
421ACGGCTCCGT GCCTGTGCTC CGCGCCTTCG GGGTCACCGA TGAGGGGTTC TCTGTCTGCT
481GCCACATCCA CGGCTTCGCT CCCTACTTCT ACACCCCAGC GCCCCCTGGT TTCGGGCCCG
541AGCACATGGG TGACCTGCAA CGGGAGCTGA ACTTGGCCAT CAGCCGGGAC AGTCGCGGGG
601GGAGGGAGCT GACTGGGCCG GCCGTGCTGG CTGTGGAACT GTGCTCCCGA GAGAGCATGT
661TTGGGTACCA CGGGCACGGC CCCTCCCCGT TCCTGCGCAT CACCGTGGCG CTGCCGCGCC
721TCGTGGCCCC GGCCCGCCGT CTCCTGGAAC AGGGCATCCG TGTGGCAGGC CTGGGCACGC
781CCAGCTTCGC GCCCTACGAG GCCAACGTCG ACTTTGAGAT CCGGTTCATG GTGGACACGG
841ACATCGTCGG CTGCAACTGG CTGGAGCTCC CAGCTGGGAA ATACGCCCTG AGGCTGAAGG
901AGAAGGCTAC GCAGTGCCAG CTGGAGGCGG ACGTGCTGTG GTCTGACGTG GTCAGTCACC
961CACCGGAAGG GCCATGGCAG CGCATTGCGC CCTTGCGCGT GCTCAGCTTC GATATCGAGT
1021GCGCCGGCCG CAAAGGCATC TTCCCTGAGC CTGAGCGGGA CCCTGTCATC CAGATCTGCT
1081CGCTGGGCCT GCGCTGGGGG GAGCCGGAGC CCTTCCTACG CCTGGCGCTC ACCCTGCGGC
1141CCTGTGCCCC CATCCTGGGT GCCAAGGTGC AGAGCTACGA GAAGGAGGAG GACCTGCTGC
1201AGGCCTGGTC CACCTTCATC CGTATCATGG ACCCCGACGT GATCACCGGT TACAACATCC
1261AGAACTTCGA CCTTCCGTAC CTCATCTCTC GGGCCCAGAC CCTCAAGGTA CAAACATTCC
1321CTTTCCTGGG CCGTGTGGCC GGCCTTTGCT CCAACATCCG GGACTCTTCA TTCCAGTCCA
1381AGCAGACGGG CCGGCGGGAC ACCAAGGTTG TCAGCATGGT GGGCCGCGTG CAGATGGACA
1441TGCTGCAGGT GCTGCTGCGG GAGTACAAGC TCCGCTCCTA CACGCTCAAT GCCGTGAGCT
1501TCCACTTCCT GGGCGAGCAG AAGGAGGACG TGCAGCACAG CATCATCACC GACCTGCAGA
1561ATGGGAACGA CCAGACCCGC CGCCGCCTGG CTGTGTACTG CCTGAAGGAT GCCTACCTGC
1621CACTGCGGCT GCTGGAGCGG CTCATGGTGC TGGTGAACGC CGTGGAGATG GCGAGGGTCA
1681CTGGCGTGCC CCTCAGCTAC CTGCTCAGTC GTGGCCAGCA GGTCAAGGTC GTATCCCAGC
1741TGTTGCGGCA GGCCATGCAC GAGGGGCTGC TGATGCCCGT GGTGAAGTCA GAGGGCGGCG
1801AGGACTACAC GGGAGCCACT GTCATCGAGC CCCTCAAAGG GTACTACGAC GTCCCCATCG
1861CCACCCTGGA CTTCTCCTCG CTGTACCCGT CCATCATGAT GGCCCACAAC CTGTGTTACA
1921CCACGCTCCT TCGGCCCGGG ACTGCACAGA AACTGGGCCT GACTGAGGAT CAGTTCATCA
1981GGACCCCCAC CGGGGACGAG TTTGTGAAGA CCTCAGTGCG GAAGGGGCTG CTGCCCCAGA
2041TCCTGGAGAA CCTGCTCAGT GCCCGGAAGA GGGCCAAGGC CGAGCTGGCC AAGGAGACAG
2101ACCCCCTCCG GCGCCAGGTC CTGGATGGAC GGCAGCTGGC GCTGAAGGTG AGCGCCAACT
2161CCGTATACGG CTTCACTGGC GCCCAGGTGG GCAAGTTGCC GTGCCTGGAG ATCTCACAGA
2221GCGTCACGGG GTTCGGACGT CAGATGATCG AGAAAACCAA GCAGCTGGTG GAGTCTAAGT
2281ACACAGTGGA GAATGGCTAC AGCACCAGTG CCAAGGTGGT GTATGGTGAC ACTGACTCCG
2341TCATGTGCCG ATTCGGCGTG TCCTCGGTGG CTGAGGCGAT GGCCCTGGGG CGGGAGGCCG
2401CGGACTGGGT GTCAGGTCAC TTCCCGTCGC CCATCCGGCT GGAGTTTGAG AAGGTCTACT
2461TCCCATACCT GCTTATCAGC AAGAAGCGCT ACGCGGGCCT GCTCTTCTCC TCCCGGCCCG
2521ACGCCCACGA CCGCATGGAC TGCAAGGGCC TGGAGGCCGT GCGCAGGGAC AACTGCCCCC
2581TCGTGGCCAA CCTGGTCACT GCCTCACTGC GCCGCCTGCT CATCGACCGA GACCCTGAGG
2641GCGCGGTGGC TCACGCACAG GACGTCATCT CGGACCTGCT GTGCAACCGC ATCGATATCT
2701CCCAGCTGGT CATCACCAAG GAGCTGACCC GCGCGGCCTC CGACTATGCC GGCAAGCAGG
2761CCCACGTGGA GCTGGCCGAG AGGATGAGGA AGCGGGACCC CGGGAGTGCG CCCAGCCTGG
2821GCGACCGCGT CCCCTACGTG ATCATCAGTG CCGCCAAGGG TGTGGCCGCC TACATGAAGT
2881CGGAGGACCC GCTGTTCGTG CTGGAGCACA GCCTGCCCAT TGACACGCAG TACTACCTGG
2941AGCAGCAGCT GGCCAAGCCC CTCCTGCGCA TCTTCGAGCC CATCCTGGGC GAGGGCCGTG
3001CCGAGGCTGT GCTACTGCGG GGGGACCACA CGCGCTGCAA GACGGTGCTC ACGGGCAAGG
3061TGGGCGGCCT CCTGGCCTTC GCCAAACGCC GCAACTGCTG CATTGGCTGC CGCACAGTGC
3121TCAGCCACCA GGGAGCCGTG TGTGAGTTCT GCCAGCCCCG GGAGTCTGAG CTGTATCAGA
3181AGGAGGTATC CCATCTGAAT GCCCTGGAGG AGCGCTTCTC GCGCCTCTGG ACGCAGTGCC
3241AGCGCTGCCA GGGCAGCCTG CACGAGGACG TCATCTGCAC CAGCCGGGAC TGCCCCATCT
3301TCTACATGCG CAAGAAGGTG CGGAAGGACC TGGAAGACCA GGAGCAGCTC CTGCGGCGCT
3361TCGGACCCCC TGGACCTGAG GCCTGGTGCC CAACTTTCTT GTACAAAGTt ggcattataa
3421gaaagcattg cttatcaatt tgttgcaacg aac

Download FASTA (ORF) (Full)