Construct: ORF ccsbBroadEn_06780
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF001215.1_s300c1, BRDN0000455567
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- PROP1 (5626)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 5626 | PROP1 | PROP paired-like homeobox 1 | NM_006261.4 | 99.8% | 99.5% | 35C>T |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 747
- ORF length:
- 678
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGAAGCAGAA AGGAGGCGCC AGGCTGAGAA GCTAAAGAAG GGGCGAGTCG 121 GCAGCAGCCT GTTGCCTGAG AGACACCCGG CCACTGGGAC CCCGACCACC ACGGTGGACT 181 CGAGTGCTCC ACCCTGCAGA AGGCTCCCTG GTGCAGGAGG GGGGAGATCA AGGTTCTCCC 241 CGCAAGGAGG ACAGAGGGGC CGCCCGCACT CCCGGCGCCG CCACCGCACC ACCTTCAGCC 301 CAGTGCAGTT GGAACAGCTG GAGTCAGCCT TTGGGAGGAA CCAGTACCCC GACATCTGGG 361 CCCGAGAGAG TCTTGCCCGG GACACTGGCC TCAGTGAGGC CCGAATCCAG GTCTGGTTCC 421 AGAACCGCAG AGCTAAGCAA CGGAAGCAAG AGCGCTCACT GCTTCAGCCT CTGGCCCATC 481 TGTCTCCTGC CGCCTTTTCC AGCTTCTTGC CAGAGTCCAC TGCTTGCCCC TATTCTTACG 541 CAGCACCACC ACCACCAGTG ACCTGCTTCC CTCACCCCTA CAGCCATGCC CTCCCTTCCC 601 AGCCCTCCAC AGGAGGCGCC TTTGCTTTGT CACACCAGTC TGAGGACTGG TACCCTACCT 661 TGCACCCAGC CCCTGCCGGC CATCTGCCCT GCCCCCCACC CCCTCCCATG CTCCCCCTCA 721 GCCTTGAGCC ATCCAAGTCC TGGAACTTGC CAACTTTCTT GTACAAAGTT GGcattataa 781 gaaagcattg cttatcaatt tgttgcaacg aac