Construct: ORF ccsbBroadEn_06860

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF011019.1_s300c1, BRDN0000392317
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RGR (5995)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 5995 RGR retinal G protein coupled r... NM_002921.3 99.6% 100% 19C>T;27T>C;471C>T
2 human 5995 RGR retinal G protein coupled r... NM_001012720.2 98.3% 98.6% (many diffs)
3 human 5995 RGR retinal G protein coupled r... NM_001012722.1 85.4% 85.7% (many diffs)
4 human 5995 RGR retinal G protein coupled r... XM_024448118.1 71.5% 71.1% (many diffs)
5 human 5995 RGR retinal G protein coupled r... XR_002957005.1 30.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
951
ORF length:
885
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC AGAGACCAGT GCCTTGCCCA CCGGCTTCGG GGAGCTCGAG GTGCTGGCTG
121TGGGGATGGT GCTACTGGTG GAAGCTCTCT CCGGTCTCAG CCTCAATACC CTGACCATCT
181TCTCTTTCTG CAAGACCCCG GAGCTGCGGA CTCCCTGCCA CCTACTGGTG CTGAGCTTGG
241CTCTTGCGGA CAGTGGGATC AGCCTGAATG CCCTCGTTGC AGCCACATCC AGCCTTCTCC
301GTGTCTCCCA CAGGCGCTGG CCCTACGGCT CGGACGGCTG CCAGGCTCAC GGCTTCCAGG
361GCTTTGTGAC AGCGTTGGCC AGCATCTGCA GCAGTGCAGC CATCGCATGG GGGCGTTATC
421ACCACTACTG CACCCGTAGC CAGCTGGCCT GGAACTCAGC CGTCTCTCTG GTGCTCTTCG
481TGTGGCTGTC TTCTGCCTTC TGGGCAGCTC TGCCCCTTCT GGGTTGGGGT CACTATGACT
541ATGAGCCACT GGGGACATGC TGCACCCTGG ACTACTCCAA GGGGGACAGA AACTTCACCA
601GCTTCCTCTT CACCATGTCC TTCTTCAACT TCGCCATGCC CCTCTTCATC ACGATCACTT
661CCTACAGTCT CATGGAGCAG AAACTGGGGA AGAGTGGCCA TCTCCAGGTA AACACCACTC
721TGCCAGCAAG GACGCTGCTG CTCGGCTGGG GCCCCTATGC CATCCTGTAT CTATACGCAG
781TCATCGCAGA CGTGACTTCC ATCTCCCCCA AACTGCAGAT GGTGCCCGCC CTCATTGCCA
841AAATGGTGCC CACGATCAAT GCCATCAACT ATGCCCTGGG CAATGAGATG GTCTGCAGGG
901GAATCTGGCA GTGCCTCTCA CCGCAGAAGA GGGAGAAGGA CCGAACCAAG TGCCCAACTT
961TCTTGTACAA AGTtggcatt ataagaaagc attgcttatc aatttgttgc aacgaac

Download FASTA (ORF) (Full)