Construct: ORF ccsbBroadEn_06917
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018555.1_s300c1, BRDN0000393766
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SCTR (6344)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 6344 | SCTR | secretin receptor | NM_002980.2 | 99.8% | 99.7% | 652G>A;1176T>C |
| 2 | human | 6344 | SCTR | secretin receptor | XM_011511621.2 | 98.7% | 98.6% | 652G>A;851_865del;1191T>C |
| 3 | human | 6344 | SCTR | secretin receptor | XM_017004670.1 | 94.7% | 93.7% | (many diffs) |
| 4 | human | 6344 | SCTR | secretin receptor | XM_017004671.1 | 90.6% | 90.5% | (many diffs) |
| 5 | human | 6344 | SCTR | secretin receptor | XM_024453038.1 | 84.3% | 84.3% | 0_1ins204;448G>A;972T>C |
| 6 | human | 6344 | SCTR | secretin receptor | XM_017004672.1 | 83.4% | 83.3% | (many diffs) |
| 7 | human | 6344 | SCTR | secretin receptor | XR_922984.2 | 66.7% | (many diffs) | |
| 8 | human | 6344 | SCTR | secretin receptor | XR_001738887.1 | 62.6% | (many diffs) | |
| 9 | human | 6344 | SCTR | secretin receptor | XR_001738889.1 | 60.3% | (many diffs) | |
| 10 | human | 6344 | SCTR | secretin receptor | XM_005263730.5 | 59.3% | 59.3% | 0_1ins534;118G>A;642T>C |
| 11 | human | 6344 | SCTR | secretin receptor | XM_017004673.1 | 58.7% | 58.6% | (many diffs) |
| 12 | human | 6344 | SCTR | secretin receptor | XR_001738888.1 | 54.1% | (many diffs) | |
| 13 | mouse | 319229 | Sctr | secretin receptor | XM_006529688.3 | 70.3% | 69.3% | (many diffs) |
| 14 | mouse | 319229 | Sctr | secretin receptor | XM_011248029.1 | 70.3% | 69.3% | (many diffs) |
| 15 | mouse | 319229 | Sctr | secretin receptor | XM_011248030.2 | 70.3% | 69.3% | (many diffs) |
| 16 | mouse | 319229 | Sctr | secretin receptor | XM_011248031.2 | 66.6% | 65.8% | (many diffs) |
| 17 | mouse | 319229 | Sctr | secretin receptor | XM_006529689.3 | 58.6% | 54.9% | (many diffs) |
| 18 | mouse | 319229 | Sctr | secretin receptor | XM_006529690.3 | 42.9% | 42.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1386
- ORF length:
- 1320
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCG TCCCCACCTG TCGCCGCCGC TGCAGCAGCT ACTACTGCCG GTGCTGCTCG 121 CCTGCGCCGC GCACTCGACT GGAGCCCTTC CCCGACTATG TGACGTGCTA CAAGTGCTGT 181 GGGAAGAGCA AGACCAGTGC CTGCAGGAAC TCTCCAGAGA GCAGACAGGA GACCTGGGCA 241 CGGAGCAGCC AGTGCCAGGT TGTGAGGGGA TGTGGGACAA CATAAGCTGC TGGCCCTCTT 301 CTGTGCCGGG CCGGATGGTG GAGGTGGAAT GCCCGAGATT CCTCCGGATG CTCACCAGCA 361 GAAATGGTTC CTTGTTCCGA AACTGCACAC AGGATGGCTG GTCAGAAACC TTCCCCAGGC 421 CTAATCTGGC CTGTGGCGTT AATGTGAACG ACTCTTCCAA CGAGAAGCGG CACTCCTACC 481 TGCTGAAGCT GAAAGTCATG TACACCGTGG GCTACAGCTC CTCCCTGGTC ATGCTCCTGG 541 TCGCCCTTGG CATCCTCTGT GCTTTCCGGA GGCTCCACTG CACTCGCAAC TACATCCACA 601 TGCACCTGTT CGTGTCCTTC ATCCTTCGTG CCCTGTCCAA CTTCATCAAG GACGCCGTGC 661 TCTTCTCCTC AGATGATGTC ACCTACTGCG ATGCCCACAG GGCGGGCTGC AAGCTGATCA 721 TGGTGCTGTT CCAGTACTGC ATCATGGCCA ACTACTCCTG GCTGCTGGTG GAAGGCCTCT 781 ACCTTCACAC ACTCCTCGCC ATCTCCTTCT TCTCTGAAAG AAAGTACCTC CAGGGATTTG 841 TGGCATTCGG ATGGGGTTCT CCAGCCATTT TTGTTGCTTT GTGGGCTATT GCCAGACACT 901 TTCTGGAAGA TGTTGGGTGC TGGGACATCA ATGCCAACGC ATCCATCTGG TGGATCATTC 961 GTGGTCCTGT GATCCTCTCC ATCCTGATTA ATTTCATCCT TTTCATAAAC ATTCTAAGAA 1021 TCCTGATGAG AAAACTTAGA ACCCAAGAAA CAAGAGGAAA TGAAGTCAGC CATTATAAGC 1081 GCCTGGCCAG GTCCACTCTC CTGCTGATCC CCCTCTTTGG CATCCACTAC ATCGTCTTCG 1141 CCTTCTCCCC AGAGGACGCT ATGGAGATCC AGCTGTTTTT TGAACTAGCC CTTGGCTCAT 1201 TCCAGGGACT GGTGGTGGCC GTCCTCTACT GCTTCCTCAA CGGGGAGGTG CAGCTGGAGG 1261 TTCAGAAGAA GTGGCAGCAA TGGCACCTCC GTGAGTTCCC ACTGCACCCC GTGGCCTCCT 1321 TCAGCAACAG CACCAAGGCC AGCCACTTGG AGCAGAGCCA GGGCACCTGC AGGACCAGCA 1381 TCATCTGCCC AACTTTCTTG TACAAAGTtg gcattataag aaagcattgc ttatcaattt 1441 gttgcaacga ac