Construct: ORF ccsbBroadEn_06960

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005519.1_s300c1, BRDN0000457015
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SLC5A5 (6528)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 6528 SLC5A5 solute carrier family 5 mem... NM_000453.3 99.9% 100% 657G>A
2 human 6528 SLC5A5 solute carrier family 5 mem... XM_011528192.2 98.2% 98.3% 657G>A;966_998del
3 human 6528 SLC5A5 solute carrier family 5 mem... XM_017027158.1 86.1% 86.1% 0_1ins267;390G>A
4 human 6528 SLC5A5 solute carrier family 5 mem... XM_011528193.3 84.6% 84.7% 0_1ins267;390G>A;699_731del
5 human 6528 SLC5A5 solute carrier family 5 mem... XM_011528194.3 79.6% 79.6% 0_1ins366;291G>A;600_632del
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1998
ORF length:
1929
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GGAGGCCGTG GAGACCGGGG AACGGCCCAC CTTCGGAGCC TGGGACTACG
121GGGTCTTTGC CCTCATGCTC CTGGTGTCCA CTGGCATCGG GCTGTGGGTC GGGCTGGCTC
181GGGGCGGGCA GCGCAGCGCT GAGGACTTCT TCACCGGGGG CCGGCGCCTG GCGGCCCTGC
241CCGTGGGCCT GTCGCTGTCT GCCAGCTTCA TGTCGGCCGT GCAGGTGCTG GGCGTGCCGT
301CGGAGGCCTA TCGCTATGGC CTCAAGTTCC TCTGGATGTG CCTGGGCCAG CTTCTGAACT
361CGGTCCTCAC CGCCCTGCTC TTCATGCCCG TCTTCTACCG CCTGGGCCTC ACCAGCACCT
421ACGAGTACCT GGAGATGCGC TTCAGCCGCG CAGTGCGGCT CTGCGGGACT TTGCAGTACA
481TTGTAGCCAC GATGCTGTAC ACCGGCATCG TAATCTACGC ACCGGCCCTC ATCCTGAACC
541AAGTGACCGG GCTGGACATC TGGGCGTCGC TCCTGTCCAC CGGAATTATC TGCACCTTCT
601ACACGGCTGT GGGCGGCATG AAGGCTGTGG TCTGGACTGA TGTGTTCCAG GTCGTGGTGA
661TGCTAAGTGG CTTCTGGGTT GTCCTGGCAC GCGGTGTCAT GCTTGTGGGC GGGCCCCGCC
721AGGTACTCAC GCTGGCCCAG AACCACTCCC GGATCAACCT CATGGACTTT AACCCTGACC
781CGAGGAGCCG CTATACATTC TGGACTTTTG TGGTGGGTGG CACGTTGGTG TGGCTCTCCA
841TGTATGGCGT GAACCAGGCG CAGGTGCAGC GCTACGTGGC TTGCCGCACA GAGAAGCAGG
901CCAAGCTGGC CCTGCTCATC AACCAGGTCG GCCTGTTCCT GATCGTGTCC AGCGCTGCCT
961GCTGTGGCAT CGTCATGTTT GTGTTCTACA CTGACTGCGA CCCTCTCCTC CTGGGGCGCA
1021TCTCTGCCCC AGACCAGTAC ATGCCTCTGC TGGTGCTGGA CATCTTCGAA GATCTGCCTG
1081GAGTCCCCGG GCTTTTCCTG GCCTGTGCTT ACAGTGGCAC CCTCAGCACA GCATCCACCA
1141GCATCAATGC TATGGCTGCA GTCACTGTAG AAGACCTCAT CAAACCTCGG CTGCGGAGCC
1201TGGCACCCAG GAAACTCGTG ATTATCTCCA AGGGGCTCTC ACTCATCTAC GGATCGGCCT
1261GTCTCACCGT GGCAGCCCTG TCCTCACTGC TCGGAGGAGG TGTCCTTCAG GGCTCCTTCA
1321CCGTCATGGG AGTCATCAGC GGCCCCCTGC TGGGAGCCTT CATCTTGGGA ATGTTCCTGC
1381CGGCCTGCAA CACACCGGGC GTCCTCGCGG GACTAGGCGC GGGCTTGGCG CTGTCGCTGT
1441GGGTGGCCTT GGGCGCCACG CTGTACCCAC CCAGCGAGCA GACCATGAGG GTCCTGCCAT
1501CGTCGGCTGC CCGCTGCGTG GCTCTCTCAG TCAACGCCTC TGGCCTCCTG GACCCGGCTC
1561TCCTCCCTGC TAACGACTCC AGCAGGGCCC CCAGCTCAGG AATGGACGCC AGCCGACCCG
1621CCTTAGCTGA CAGCTTCTAT GCCATCTCCT ATCTCTATTA CGGTGCCCTG GGCACGCTGA
1681CCACTGTGCT GTGCGGAGCC CTCATCAGCT GCCTGACAGG CCCCACCAAG CGCAGCACCC
1741TGGCCCCGGG ATTGTTGTGG TGGGACCTCG CACGGCAGAC AGCATCAGTG GCCCCCAAGG
1801AAGAAGTGGC CATCCTGGAT GACAACTTGG TCAAGGGTCC TGAAGAACTC CCCACTGGAA
1861ACAAGAAGCC CCCTGGCTTC CTGCCCACCA ATGAGGATCG TCTGTTTTTC TTGGGGCAGA
1921AGGAGCTGGA GGGGGCTGGC TCTTGGACCC CCTGTGTTGG ACATGATGGT GGTCGAGACC
1981AGCAGGAGAC AAACCTCTTG CCAACTTTCT TGTACAAAGT TGGcattata agaaagcatt
2041gcttatcaat ttgttgcaac gaac

Download FASTA (ORF) (Full)

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