Construct: ORF ccsbBroadEn_06989

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF011258.1_s300c1, BRDN0000386451
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SPINT1 (6692)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 6692 SPINT1 serine peptidase inhibitor,... NM_001032367.2 99.8% 100% 1227C>T;1530G>C
2 human 6692 SPINT1 serine peptidase inhibitor,... NM_003710.4 99.8% 100% 1227C>T;1530G>C
3 human 6692 SPINT1 serine peptidase inhibitor,... NM_181642.3 96.8% 96.9% 913_960del;1275C>T;1578G>C
4 human 6692 SPINT1 serine peptidase inhibitor,... XM_006720657.1 96.8% 96.9% 913_960del;1275C>T;1578G>C
5 human 6692 SPINT1 serine peptidase inhibitor,... XM_011521957.2 93.1% 88.8% (many diffs)
6 human 6692 SPINT1 serine peptidase inhibitor,... XM_011521958.2 91.6% 91.6% 940_941ins126;1101C>T;1404G>C
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1605
ORF length:
1539
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC CCCTGCGAGG ACGATGGCCC GCGCCCGCCT CGCCCCGGCC GGCATCCCTG
121CCGTCGCCTT GTGGCTTCTG TGCACGCTCG GCCTCCAGGG CACCCAGGCC GGGCCACCGC
181CCGCGCCCCC TGGGCTGCCC GCGGGAGCCG ACTGCCTGAA CAGCTTTACC GCCGGGGTGC
241CTGGCTTCGT GCTGGACACC AACGCCTCGG TCAGCAACGG AGCTACCTTC CTGGAGTCCC
301CCACCGTGCG CCGGGGCTGG GACTGCGTGC GCGCCTGCTG CACCACCCAG AACTGCAACT
361TGGCGCTAGT GGAGCTGCAG CCCGACCGCG GGGAGGACGC CATCGCCGCC TGCTTCCTCA
421TCAACTGCCT CTACGAGCAG AACTTCGTGT GCAAGTTCGC GCCCAGGGAG GGCTTCATCA
481ACTACCTCAC GAGGGAAGTG TACCGCTCCT ACCGCCAGCT GCGGACCCAG GGCTTTGGAG
541GGTCTGGGAT CCCCAAGGCC TGGGCAGGCA TAGACTTGAA GGTACAACCC CAGGAACCCC
601TGGTGCTGAA GGATGTGGAA AACACAGATT GGCGCCTACT GCGGGGTGAC ACGGATGTCA
661GGGTAGAGAG GAAAGACCCA AACCAGGTGG AACTGTGGGG ACTCAAGGAA GGCACCTACC
721TGTTCCAGCT GACAGTGACT AGCTCAGACC ACCCAGAGGA CACGGCCAAC GTCACAGTCA
781CTGTGCTGTC CACCAAGCAG ACAGAAGACT ACTGCCTCGC ATCCAACAAG GTGGGTCGCT
841GCCGGGGCTC TTTCCCACGC TGGTACTATG ACCCCACGGA GCAGATCTGC AAGAGTTTCG
901TTTATGGAGG CTGCTTGGGC AACAAGAACA ACTACCTTCG GGAAGAAGAG TGCATTCTAG
961CCTGTCGGGG TGTGCAAGGC CCCTCCATGG AAAGGCGCCA TCCAGTGTGC TCTGGCACCT
1021GTCAGCCCAC CCAGTTCCGC TGCAGCAATG GCTGCTGCAT CGACAGTTTC CTGGAGTGTG
1081ACGACACCCC CAACTGCCCC GACGCCTCCG ACGAGGCTGC CTGTGAAAAA TACACGAGTG
1141GCTTTGACGA GCTCCAGCGC ATCCATTTCC CCAGTGACAA AGGGCACTGC GTGGACCTGC
1201CAGACACAGG ACTCTGCAAG GAGAGCATCC CGCGCTGGTA CTACAACCCC TTCAGCGAAC
1261ACTGCGCCCG CTTTACCTAT GGTGGTTGTT ATGGCAACAA GAACAACTTT GAGGAAGAGC
1321AGCAGTGCCT CGAGTCTTGT CGCGGCATCT CCAAGAAGGA TGTGTTTGGC CTGAGGCGGG
1381AAATCCCCAT TCCCAGCACA GGCTCTGTGG AGATGGCTGT CGCAGTGTTC CTGGTCATCT
1441GCATTGTGGT GGTGGTAGCC ATCTTGGGTT ACTGCTTCTT CAAGAACCAG AGAAAGGACT
1501TCCACGGACA CCACCACCAC CCACCACCCA CCCCTGCCAG CTCCACTGTC TCCACTACCG
1561AGGACACGGA GCACCTGGTC TATAACCACA CCACCCGGCC CCTCTGCCCA ACTTTCTTGT
1621ACAAAGTtgg cattataaga aagcattgct tatcaatttg ttgcaacgaa c

Download FASTA (ORF) (Full)