Construct: ORF ccsbBroadEn_07044

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009515.1_s300c1, BRDN0000397777
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TDGF1 (6997)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 6997 TDGF1 teratocarcinoma-derived gro... NM_003212.4 99.8% 99.4% 65T>C
2 human 6997 TDGF1 teratocarcinoma-derived gro... NM_001174136.2 91.3% 90.9% 0_1ins48;17T>C
3 human 6998 TDGF1P3 teratocarcinoma-derived gro... NR_002718.2 20.5% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
630
ORF length:
564
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGA CTGCAGGAAG ATGGCCCGCT TCTCTTACAG TGTGATTTGG ATCATGGCCA
121TTTCTAAAGC CTTTGAACTG GGATTAGTTG CCGGGCTGGG CCATCAGGAA TTTGCTCGTC
181CATCTCGGGG ATACCTGGCC TTCAGAGATG ACAGCATTTG GCCCCAGGAG GAGCCTGCAA
241TTCGGCCTCG GTCTTCCCAG CGTGTGCCGC CCATGGGGAT ACAGCACAGT AAGGAGCTAA
301ACAGAACCTG CTGCCTGAAT GGGGGAACCT GCATGCTGGG GTCCTTTTGT GCCTGCCCTC
361CCTCCTTCTA CGGACGGAAC TGTGAGCACG ATGTGCGCAA AGAGAACTGT GGGTCTGTGC
421CCCATGACAC CTGGCTGCCC AAGAAGTGTT CCCTGTGTAA ATGCTGGCAC GGTCAGCTCC
481GCTGCTTTCC TCAGGCATTT CTACCCGGCT GTGATGGCCT TGTGATGGAT GAGCACCTCG
541TGGCTTCCAG GACTCCAGAA CTACCACCGT CTGCACGTAC TACCACTTTT ATGCTAGTTG
601GCATCTGCCT TTCTATACAA AGCTACTATT ACCCAACTTT CTTGTACAAA GTtggcatta
661taagaaagca ttgcttatca atttgttgca acgaac

Download FASTA (ORF) (Full)