Construct: ORF ccsbBroadEn_07087

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004956.1_s300c1, BRDN0000392997
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TNXB (7148)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 7148 TNXB tenascin XB NM_032470.3 99.9% 99.8% 659A>T
2 human 7146 TNXA tenascin XA (pseudogene) NR_001284.2 66.8% (many diffs)
3 human 7148 TNXB tenascin XB NM_019105.8 15.8% 15.8% 1_10707del;11366A>T
4 human 7148 TNXB tenascin XB NM_001365276.2 15.8% 15.8% 1_10713del;11372A>T
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2085
ORF length:
2019
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGCG CCTCTCGTGG AGCGTGGCCC AGGGCCCCTT TGATTCCTTC GTGGTCCAGT
121ATGAGGACAC GAACGGGCAG CCCCAGGCCT TGCTCGTGGA CGGCGACCAG AGCAAGATCC
181TCATCTCAGG CCTGGAGCCC AGCACCCCCT ACAGGTTCCT CCTCTATGGC CTCCATGAAG
241GGAAGCGCCT GGGGCCCCTC TCAGCTGAGG GCACCACAGG GCTGGCTCCT GCTGGTCAGA
301CCTCAGAGGA GTCAAGGCCC CGCCTGTCCC AGCTGTCTGT GACTGACGTG ACCACCAGTT
361CACTGAGGCT CAACTGGGAG GCCCCACCGG GGGCCTTCGA CTCCTTCCTG CTCCGCTTTG
421GGGTTCCATC ACCAAGCACT CTGGAGCCGC ATCCGCGTCC ACTGCTGCAG CGCGAGCTGA
481TGGTGCCGGG GACGCGGCAC TCGGCCGTGC TCCGGGACCT GCGTTCCGGG ACTCTGTACA
541GCCTGACACT GTATGGGCTG CGAGGACCCC ACAAGGCCGA CAGCATCCAG GGAACCGCCC
601GCACCCTCAG CCCAGTTCTG GAGAGCCCCC GTGACCTCCA ATTCAGTGAA ATCAGGGAGA
661CCTCAGCCAA GGTCAACTGG ATGCCCCCAC CATCCCGGGC GGACAGCTTC AAAGTCTCCT
721ACCTGCTGGC GGACGGAGGG GAGCCTCAGA GTGTGCAGGT GGATGGCCAG GCCCGGACCC
781AGAAACTCCA GGGGCTGATC CCAGGCGCTC GCTATGAGGT GACCGTGGTC TCGGTCCGAG
841GCTTTGAGGA GAGTGAGCCT CTCACAGGCT TCCTCACCAC GGTTCCTGAC GGTCCCACAC
901AGTTGCGTGC ACTGAACTTG ACCGAGGGAT TCGCCGTGCT GCACTGGAAG CCCCCCCAGA
961ATCCTGTGGA CACCTATGAC GTCCAGGTCA CAGCCCCTGG GGCCCCGCCT CTGCAGGCGG
1021AGACCCCAGG CAGCGCGGTG GACTACCCCC TGCATGACCT TGTCCTCCAC ACCAACTACA
1081CCGCCACAGT GCGTGGCCTG CGGGGCCCCA ACCTCACTTC CCCAGCCAGC ATCACCTTCA
1141CCACAGGGCT AGAGGCCCCT CGGGACTTGG AGGCCAAGGA AGTGACCCCC CGCACCGCCC
1201TGCTCACTTG GACTGAGCCC CCAGTCCGGC CCGCAGGCTA CCTGCTCAGC TTCCACACCC
1261CTGGTGGACA GAACCAGGAG ATCCTGCTCC CAGGAGGGAT CACATCTCAC CAGCTCCTTG
1321GCCTCTTTCC CTCCACCTCC TACAATGCAC GGCTCCAGGC CATGTGGGGC CAGAGCCTCC
1381TGCCGCCCGT GTCCACCTCT TTCACCACGG GTGGGCTGCG GATCCCCTTC CCCAGGGACT
1441GCGGGGAGGA GATGCAGAAC GGAGCCGGTG CCTCCAGGAC CAGCACCATC TTCCTCAACG
1501GCAACCGCGA GCGGCCCCTG AACGTGTTTT GCGACATGGA GACTGATGGG GGCGGCTGGC
1561TGGTGTTCCA GCGCCGCATG GATGGACAGA CAGACTTCTG GAGGGACTGG GAGGACTATG
1621CCCATGGTTT TGGGAACATC TCTGGAGAGT TCTGGCTGGG CAATGAGGCC CTGCACAGCC
1681TGACACAGGC AGGTGACTAC TCCATGCGCG TGGACCTGCG GGCTGGGGAC GAGGCTGTGT
1741TCGCCCAGTA CGACTCCTTC CACGTAGACT CGGCTGCGGA GTACTACCGC CTCCACTTGG
1801AGGGCTACCA CGGCACCGCA GGGGACTCCA TGAGCTACCA CAGCGGCAGT GTCTTCTCTG
1861CCCGTGATCG GGACCCCAAC AGCTTGCTCA TCTCCTGCGC TGTCTCCTAC CGAGGGGCCT
1921GGTGGTACAG GAACTGCCAC TACGCCAACC TCAACGGGCT CTACGGGAGC ACAGTGGACC
1981ATCAGGGAGT GAGCTGGTAC CACTGGAAGG GCTTCGAGTT CTCGGTGCCC TTCACGGAAA
2041TGAAGCTGAG ACCAAGAAAC TTTCGCTCCC CAGCGGGGGG AGGCTGCCCA ACTTTCTTGT
2101ACAAAGTtgg cattataaga aagcattgct tatcaatttg ttgcaacgaa c

Download FASTA (ORF) (Full)