Construct: ORF ccsbBroadEn_07087
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004956.1_s300c1, BRDN0000392997
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TNXB (7148)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 7148 | TNXB | tenascin XB | NM_032470.3 | 99.9% | 99.8% | 659A>T |
| 2 | human | 7146 | TNXA | tenascin XA (pseudogene) | NR_001284.2 | 66.8% | (many diffs) | |
| 3 | human | 7148 | TNXB | tenascin XB | NM_019105.8 | 15.8% | 15.8% | 1_10707del;11366A>T |
| 4 | human | 7148 | TNXB | tenascin XB | NM_001365276.2 | 15.8% | 15.8% | 1_10713del;11372A>T |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2085
- ORF length:
- 2019
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCG CCTCTCGTGG AGCGTGGCCC AGGGCCCCTT TGATTCCTTC GTGGTCCAGT 121 ATGAGGACAC GAACGGGCAG CCCCAGGCCT TGCTCGTGGA CGGCGACCAG AGCAAGATCC 181 TCATCTCAGG CCTGGAGCCC AGCACCCCCT ACAGGTTCCT CCTCTATGGC CTCCATGAAG 241 GGAAGCGCCT GGGGCCCCTC TCAGCTGAGG GCACCACAGG GCTGGCTCCT GCTGGTCAGA 301 CCTCAGAGGA GTCAAGGCCC CGCCTGTCCC AGCTGTCTGT GACTGACGTG ACCACCAGTT 361 CACTGAGGCT CAACTGGGAG GCCCCACCGG GGGCCTTCGA CTCCTTCCTG CTCCGCTTTG 421 GGGTTCCATC ACCAAGCACT CTGGAGCCGC ATCCGCGTCC ACTGCTGCAG CGCGAGCTGA 481 TGGTGCCGGG GACGCGGCAC TCGGCCGTGC TCCGGGACCT GCGTTCCGGG ACTCTGTACA 541 GCCTGACACT GTATGGGCTG CGAGGACCCC ACAAGGCCGA CAGCATCCAG GGAACCGCCC 601 GCACCCTCAG CCCAGTTCTG GAGAGCCCCC GTGACCTCCA ATTCAGTGAA ATCAGGGAGA 661 CCTCAGCCAA GGTCAACTGG ATGCCCCCAC CATCCCGGGC GGACAGCTTC AAAGTCTCCT 721 ACCTGCTGGC GGACGGAGGG GAGCCTCAGA GTGTGCAGGT GGATGGCCAG GCCCGGACCC 781 AGAAACTCCA GGGGCTGATC CCAGGCGCTC GCTATGAGGT GACCGTGGTC TCGGTCCGAG 841 GCTTTGAGGA GAGTGAGCCT CTCACAGGCT TCCTCACCAC GGTTCCTGAC GGTCCCACAC 901 AGTTGCGTGC ACTGAACTTG ACCGAGGGAT TCGCCGTGCT GCACTGGAAG CCCCCCCAGA 961 ATCCTGTGGA CACCTATGAC GTCCAGGTCA CAGCCCCTGG GGCCCCGCCT CTGCAGGCGG 1021 AGACCCCAGG CAGCGCGGTG GACTACCCCC TGCATGACCT TGTCCTCCAC ACCAACTACA 1081 CCGCCACAGT GCGTGGCCTG CGGGGCCCCA ACCTCACTTC CCCAGCCAGC ATCACCTTCA 1141 CCACAGGGCT AGAGGCCCCT CGGGACTTGG AGGCCAAGGA AGTGACCCCC CGCACCGCCC 1201 TGCTCACTTG GACTGAGCCC CCAGTCCGGC CCGCAGGCTA CCTGCTCAGC TTCCACACCC 1261 CTGGTGGACA GAACCAGGAG ATCCTGCTCC CAGGAGGGAT CACATCTCAC CAGCTCCTTG 1321 GCCTCTTTCC CTCCACCTCC TACAATGCAC GGCTCCAGGC CATGTGGGGC CAGAGCCTCC 1381 TGCCGCCCGT GTCCACCTCT TTCACCACGG GTGGGCTGCG GATCCCCTTC CCCAGGGACT 1441 GCGGGGAGGA GATGCAGAAC GGAGCCGGTG CCTCCAGGAC CAGCACCATC TTCCTCAACG 1501 GCAACCGCGA GCGGCCCCTG AACGTGTTTT GCGACATGGA GACTGATGGG GGCGGCTGGC 1561 TGGTGTTCCA GCGCCGCATG GATGGACAGA CAGACTTCTG GAGGGACTGG GAGGACTATG 1621 CCCATGGTTT TGGGAACATC TCTGGAGAGT TCTGGCTGGG CAATGAGGCC CTGCACAGCC 1681 TGACACAGGC AGGTGACTAC TCCATGCGCG TGGACCTGCG GGCTGGGGAC GAGGCTGTGT 1741 TCGCCCAGTA CGACTCCTTC CACGTAGACT CGGCTGCGGA GTACTACCGC CTCCACTTGG 1801 AGGGCTACCA CGGCACCGCA GGGGACTCCA TGAGCTACCA CAGCGGCAGT GTCTTCTCTG 1861 CCCGTGATCG GGACCCCAAC AGCTTGCTCA TCTCCTGCGC TGTCTCCTAC CGAGGGGCCT 1921 GGTGGTACAG GAACTGCCAC TACGCCAACC TCAACGGGCT CTACGGGAGC ACAGTGGACC 1981 ATCAGGGAGT GAGCTGGTAC CACTGGAAGG GCTTCGAGTT CTCGGTGCCC TTCACGGAAA 2041 TGAAGCTGAG ACCAAGAAAC TTTCGCTCCC CAGCGGGGGG AGGCTGCCCA ACTTTCTTGT 2101 ACAAAGTtgg cattataaga aagcattgct tatcaatttg ttgcaacgaa c