Construct: ORF ccsbBroadEn_07104
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF017821.1_s300c1, BRDN0000385960
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TSHR (7253)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 7253 | TSHR | thyroid stimulating hormone... | NM_001018036.3 | 99.7% | 99.6% | 696A>G;742C>A |
| 2 | human | 7253 | TSHR | thyroid stimulating hormone... | XM_005268039.1 | 99.7% | 99.6% | 696A>G;742C>A |
| 3 | human | 7253 | TSHR | thyroid stimulating hormone... | NM_001142626.3 | 92% | 91.9% | 693_755del;759A>G;805C>A |
| 4 | human | 7253 | TSHR | thyroid stimulating hormone... | XM_006720245.1 | 92% | 91.9% | 693_755del;759A>G;805C>A |
| 5 | human | 7253 | TSHR | thyroid stimulating hormone... | NM_000369.3 | 32.4% | 30.1% | (many diffs) |
| 6 | human | 7253 | TSHR | thyroid stimulating hormone... | XM_005268037.4 | 32.4% | 30.1% | (many diffs) |
| 7 | human | 7253 | TSHR | thyroid stimulating hormone... | XM_011537119.2 | 19.9% | 16.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 825
- ORF length:
- 759
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAG GCCGGCGGAC TTGCTGCAGC TGGTGCTGCT GCTCGACCTG CCCAGGGACC 121 TGGGCGGAAT GGGGTGTTCG TCTCCACCCT GCGAGTGCCA TCAGGAGGAG GACTTCAGAG 181 TCACCTGCAA GGATATTCAA CGCATCCCCA GCTTACCGCC CAGTACGCAG ACTCTGAAGC 241 TTATTGAGAC TCACCTGAGA ACTATTCCAA GTCATGCATT TTCTAATCTG CCCAATATTT 301 CCAGAATCTA CGTATCTATA GATGTGACTC TGCAGCAGCT GGAATCACAC TCCTTCTACA 361 ATTTGAGTAA AGTGACTCAC ATAGAAATTC GGAATACCAG GAACTTAACT TACATAGACC 421 CTGATGCCCT CAAAGAGCTC CCCCTCCTAA AGTTCCTTGG CATTTTCAAC ACTGGACTTA 481 AAATGTTCCC TGACCTGACC AAAGTTTATT CCACTGATAT ATTCTTTATA CTTGAAATTA 541 CAGACAACCC TTACATGACG TCAATCCCTG TGAATGCTTT TCAGGGACTA TGCAATGAAA 601 CCTTGACACT GAAGCTGTAC AACAATGGCT TTACTTCAGT CCAAGGATAT GCTTTCAATG 661 GGACAAAGCT GGATGCTGTT TACCTAAACA AGAATAAATA CCTGACAGTT ATTGACAAAG 721 ATGCATTTGG AGGAGTATAC AGTGGACCAA GCTTGCTGCT GCCTCTTGGA AGAAAGTCCT 781 TGTCCTTTGA GACTCAGAAG GCCCCAAGCT CCAGTATGCC ATCATGCCCA ACTTTCTTGT 841 ACAAAGTtgg cattataaga aagcattgct tatcaatttg ttgcaacgaa c