Construct: ORF ccsbBroadEn_07141

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006497.1_s300c1, BRDN0000389543
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
YY1 (7528)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 7528 YY1 YY1 transcription factor NM_003403.5 99.9% 99.7% 11G>A
2 mouse 22632 Yy1 YY1 transcription factor NM_009537.3 94.8% 98.3% (many diffs)
3 mouse 22632 Yy1 YY1 transcription factor XM_006515820.3 72% 71.3% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1308
ORF length:
1242
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC CTCGGACGAC ACCCTCTACA TCGCCACGGA CGGCTCGGAG ATGCCGGCCG
121AGATCGTGGA GCTGCACGAG ATCGAGGTGG AGACCATCCC GGTGGAGACC ATCGAGACCA
181CAGTGGTGGG CGAGGAGGAG GAGGAGGACG ACGACGACGA GGACGGCGGC GGTGGCGACC
241ACGGCGGCGG GGGCGGCCAC GGGCACGCCG GCCACCACCA CCACCACCAT CACCACCACC
301ACCACCCGCC CATGATCGCT CTGCAGCCGC TGGTCACCGA CGACCCGACC CAGGTGCACC
361ACCACCAGGA GGTGATCCTG GTGCAGACGC GCGAGGAGGT GGTGGGCGGC GACGACTCGG
421ACGGGCTGCG CGCCGAGGAC GGCTTCGAGG ATCAGATTCT CATCCCGGTG CCCGCGCCGG
481CCGGCGGCGA CGACGACTAC ATTGAACAAA CGCTGGTCAC CGTGGCGGCG GCCGGCAAGA
541GCGGCGGCGG CGGCTCGTCG TCGTCGGGAG GCGGCCGCGT CAAGAAGGGC GGCGGCAAGA
601AGAGCGGCAA GAAGAGTTAC CTCAGCGGCG GGGCCGGCGC GGCGGGCGGC GGCGGCGCCG
661ACCCGGGCAA CAAGAAGTGG GAGCAGAAGC AGGTGCAGAT CAAGACCCTG GAGGGCGAGT
721TCTCGGTCAC CATGTGGTCC TCAGATGAAA AAAAAGATAT TGACCATGAG ACAGTGGTTG
781AAGAACAGAT CATTGGAGAG AACTCACCTC CTGATTATTC AGAATATATG ACAGGAAAGA
841AACTTCCTCC TGGAGGAATA CCTGGCATTG ACCTCTCAGA TCCCAAACAA CTGGCAGAAT
901TTGCTAGAAT GAAGCCAAGA AAAATTAAAG AAGATGATGC TCCAAGAACA ATAGCTTGCC
961CTCATAAAGG CTGCACAAAG ATGTTCAGGG ATAACTCGGC CATGAGAAAA CATCTGCACA
1021CCCACGGTCC CAGAGTCCAC GTCTGTGCAG AATGTGGCAA AGCTTTTGTT GAGAGTTCAA
1081AACTAAAACG ACACCAACTG GTTCATACTG GAGAGAAGCC CTTTCAGTGC ACGTTCGAAG
1141GCTGTGGGAA ACGCTTTTCA CTGGACTTCA ATTTGCGCAC ACATGTGCGA ATCCATACCG
1201GAGACAGGCC CTATGTGTGC CCCTTCGATG GTTGTAATAA GAAGTTTGCT CAGTCAACTA
1261ACCTGAAATC TCACATCTTA ACACATGCTA AGGCCAAAAA CAACCAGNGC CCAACTTTCT
1321TGTACAAAGT tggcattata agaaagcatt gcttatcaat ttgttgcaac gaac

Download FASTA (ORF) (Full)