Construct: ORF ccsbBroadEn_07151
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF000726.1_s300c1, BRDN0000386561
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF18 (7566)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 7566 | ZNF18 | zinc finger protein 18 | NM_001303281.2 | 99.8% | 99.6% | 629A>G;720G>C |
| 2 | human | 7566 | ZNF18 | zinc finger protein 18 | NM_144680.3 | 99.8% | 99.6% | 629A>G;720G>C |
| 3 | human | 7566 | ZNF18 | zinc finger protein 18 | XM_011524002.3 | 99.8% | 99.6% | 629A>G;720G>C |
| 4 | human | 7566 | ZNF18 | zinc finger protein 18 | XM_017025006.2 | 99.8% | 99.6% | 629A>G;720G>C |
| 5 | human | 7566 | ZNF18 | zinc finger protein 18 | XM_017025007.2 | 99.8% | 99.6% | 629A>G;720G>C |
| 6 | human | 7566 | ZNF18 | zinc finger protein 18 | XM_024450909.1 | 99.8% | 99.6% | 629A>G;720G>C |
| 7 | human | 7566 | ZNF18 | zinc finger protein 18 | XM_024450910.1 | 99.8% | 99.6% | 629A>G;720G>C |
| 8 | human | 7566 | ZNF18 | zinc finger protein 18 | XM_024450911.1 | 99.8% | 99.6% | 629A>G;720G>C |
| 9 | human | 7566 | ZNF18 | zinc finger protein 18 | XM_024450913.1 | 99.8% | 99.6% | 629A>G;720G>C |
| 10 | human | 7566 | ZNF18 | zinc finger protein 18 | NM_001303282.1 | 99.6% | 99.4% | 629A>G;720G>C;749_750insAGC |
| 11 | human | 7566 | ZNF18 | zinc finger protein 18 | XM_017025008.2 | 99.6% | 99.4% | 629A>G;720G>C;749_750insAGC |
| 12 | human | 7566 | ZNF18 | zinc finger protein 18 | XM_017025010.2 | 99.6% | 99.4% | 629A>G;720G>C;749_750insAGC |
| 13 | human | 7566 | ZNF18 | zinc finger protein 18 | XM_017025011.2 | 99.6% | 99.4% | 629A>G;720G>C;749_750insAGC |
| 14 | human | 7566 | ZNF18 | zinc finger protein 18 | XM_024450914.1 | 53% | 51.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1713
- ORF length:
- 1647
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCC CGTTGACTTG GGGCAGGCCC TAGGCCTGCT GCCATCGCTG GCGAAGGCCG 121 AGGACTCCCA GTTCTCAGAA TCAGATGCTG CCCTTCAAGA GGAACTCTCC AGCCCTGAGA 181 CCGCACGCCA GCTTTTCAGG CAGTTCCGTT ACCAGGTGAT GTCTGGGCCT CATGAGACCT 241 TGAAGCAACT TCGGAAGCTC TGTTTCCAGT GGCTACAGCC AGAGGTTCAC ACCAAAGAGC 301 AGATCCTAGA GATCCTCATG TTGGAGCAGT TTCTGACCAT CCTGCCTGGG GAGATCCAGA 361 TGTGGGTGCG GAAACAGTGT CCAGGAAGTG GAGAAGAGGC AGTGACCCTT GTGGAAAGCT 421 TGAAGGGGGA CCCCCAGAGA CTGTGGCAAT GGATCAGTAT CCAGGTTCTA GGACAGGACA 481 TCTTATCAGA GAAGATGGAA TCTCCAAGCT GCCAAGTGGG GGAAGTGGAG CCCCATCTTG 541 AAGTGGTGCC TCAGGAGTTG GGACTTGAGA ATTCATCCTC AGGGCCTGGG GAGCTTCTGA 601 GCCACATCGT GAAAGAGGAA TCTGACACAG AAGCAGAACT AGCCCTGGCT GCCTCCCAGC 661 CTGCCCGACT GGAGGAAAGG CTGATCAGAG ACCGGGACCT CGGAGCCTCA CTGCTCCCAG 721 CAGCACCTCA GGAACAGTGG AGACAACTGG ATTCCACTCA AAAGGAGCAA TACTGGGATC 781 TCATCCTGGA GACCTATGGG AAAATGGTCT CAGGAGCAGG CATTTCCCAT CCCAAATCTG 841 ACCTGACTAA TTCAATAGAA TTTGGGGAAG AGCTGGCAGG AATATACCTT CATGTCAATG 901 AGAAGATCCC AAGACCCACC TGCATAGGAG ATAGACAAGA GAATGACAAG GAGAACCTAA 961 ATTTGGAGAA TCACAGGGAC CAGGAGCTCC TGCATGCTTC CTGTCAAGCT TCAGGAGAGG 1021 TTCCTTCTCA GGCTTCCTTG AGGGGCTTCT TCACTGAGGA TGAGCCAGGA TGCTTTGGAG 1081 AAGGAGAGAA TCTCCCTGAG GCTCTGCAAA ACATTCAGGA TGAGGGAACA GGGGAACAGC 1141 TGTCTCCTCA AGAAAGGATT TCTGAGAAAC AACTAGGTCA GCATTTGCCT AATCCTCATT 1201 CAGGAGAAAT GTCCACCATG TGGCTTGAGG AGAAGAGAGA GACCTCCCAG AAGGGGCAGC 1261 CAAGAGCCCC CATGGCCCAG AAGCTCCCCA CCTGCAGGGA GTGTGGGAAG ACCTTTTATA 1321 GGAATTCTCA GCTTATTTTT CACCAAAGAA CTCACACCGG AGAGACATAC TTTCAGTGCA 1381 CCATCTGCAA AAAAGCCTTT CTGCGGAGTT CAGACTTTGT GAAGCATCAG AGAACTCACA 1441 CGGGAGAGAA GCCCTGTAAA TGTGATTACT GTGGGAAAGG CTTTAGTGAC TTCTCAGGAT 1501 TGCGCCACCA CGAGAAAATC CACACAGGAG AGAAACCCTA TAAATGTCCT ATCTGTGAGA 1561 AAAGTTTCAT TCAGAGATCA AACTTTAATA GACATCAGAG GGTTCACACT GGAGAGAAAC 1621 CTTATAAATG TTCGCACTGT GGGAAAAGTT TCAGCTGGAG CTCGAGCCTT GACAAACATC 1681 AAAGATCCCA CTTAGGAAAG AAGCCCTTTC AATGCCCAAC TTTCTTGTAC AAAGTtggca 1741 ttataagaaa gcattgctta tcaatttgtt gcaacgaac