Construct: ORF ccsbBroadEn_07208
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF017400.1_s300c1, BRDN0000389784
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- NRIP1 (8204)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 8204 | NRIP1 | nuclear receptor interactin... | NM_003489.4 | 99.9% | 99.9% | 2861G>T |
| 2 | human | 8204 | NRIP1 | nuclear receptor interactin... | XM_005261063.3 | 99.9% | 99.9% | 2861G>T |
| 3 | human | 8204 | NRIP1 | nuclear receptor interactin... | XM_005261065.3 | 99.9% | 99.9% | 2861G>T |
| 4 | human | 8204 | NRIP1 | nuclear receptor interactin... | XM_011529747.1 | 99.9% | 99.9% | 2861G>T |
| 5 | human | 8204 | NRIP1 | nuclear receptor interactin... | XM_011529748.2 | 99.9% | 99.9% | 2861G>T |
| 6 | human | 8204 | NRIP1 | nuclear receptor interactin... | XM_011529749.2 | 99.9% | 99.9% | 2861G>T |
| 7 | human | 8204 | NRIP1 | nuclear receptor interactin... | XM_011529751.2 | 99.9% | 99.9% | 2861G>T |
| 8 | human | 8204 | NRIP1 | nuclear receptor interactin... | XM_011529752.1 | 99.9% | 99.9% | 2861G>T |
| 9 | human | 8204 | NRIP1 | nuclear receptor interactin... | XM_017028473.1 | 99.9% | 99.9% | 2861G>T |
| 10 | human | 8204 | NRIP1 | nuclear receptor interactin... | XM_017028474.1 | 99.9% | 99.9% | 2861G>T |
| 11 | human | 8204 | NRIP1 | nuclear receptor interactin... | XM_017028475.1 | 99.9% | 99.9% | 2861G>T |
| 12 | human | 8204 | NRIP1 | nuclear receptor interactin... | XM_017028476.1 | 99.9% | 99.9% | 2861G>T |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 3540
- ORF length:
- 3474
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAC TCATGGAGAA GAGCTTGGCT CTGATGTGCA CCAGGATTCT ATTGTTTTAA 121 CTTACCTAGA AGGATTACTA ATGCATCAGG CAGCAGGGGG ATCAGGTACT GCCGTTGACA 181 AAAAGTCTGC TGGGCATAAT GAAGAGGATC AGAACTTTAA CATTTCTGGC AGTGCATTTC 241 CCACCTGTCA AAGTAATGGT CCAGTTCTCA ATACACATAC ATATCAGGGG TCTGGCATGC 301 TGCACCTCAA AAAAGCCAGA CTGTTGCAGT CTTCTGAGGA CTGGAATGCA GCAAAGCGGA 361 AGAGGCTGTC TGATTCTATC ATGAATTTAA ACGTAAAGAA GGAAGCTTTG CTAGCTGGCA 421 TGGTTGACAG TGTGCCTAAA GGCAAACAGG ATAGCACATT ACTGGCCTCT TTGCTTCAGT 481 CATTCAGCTC TAGGCTGCAG ACTGTTGCTC TGTCACAACA AATCAGGCAG AGCCTCAAGG 541 AGCAAGGATA TGCCCTCAGT CATGATTCTT TAAAAGTGGA GAAGGATTTA AGGTGCTATG 601 GTGTTGCATC AAGTCACTTA AAAACTTTGT TGAAGAAAAG TAAAGTTAAA GATCAAAAGC 661 CTGATACGAA TCTTCCTGAT GTGACTAAAA ACCTCATCAG AGATAGGTTT GCAGAGTCTC 721 CTCATCATGT TGGACAAAGT GGAACAAAGG TCATGAGTGA ACCGTTGTCA TGTGCTGCAA 781 GATTACAGGC TGTTGCAAGC ATGGTGGAAA AAAGGGCTAG TCCTGCCACC TCACCTAAAC 841 CTAGTGTTGC TTGTAGCCAG TTAGCATTAC TTCTGTCAAG CGAAGCCCAT TTGCAGCAGT 901 ATTCTCGAGA ACACGCTTTA AAAACGCAAA ATGCAAATCA AGCAGCAAGT GAAAGACTTG 961 CTGCTATGGC CAGATTGCAA GAAAATGGCC AGAAGGATGT TGGCAGTTAC CAGCTCCCAA 1021 AAGGAATGTC AAGCCATCTT AATGGTCAGG CAAGAACATC ATCAAGCAAA CTGATGGCTA 1081 GCAAAAGTAG TGCTACAGTG TTTCAAAATC CAATGGGTAT CATTCCTTCT TCCCCTAAAA 1141 ATGCAGGTTA TAAGAACTCA CTGGAAAGAA ACAATATAAA ACAAGCTGCT AACAATAGTT 1201 TGCTTTTACA TCTTCTTAAA AGCCAGACTA TACCTAAGCC AATGAATGGA CACAGTCACA 1261 GTGAGAGAGG AAGCATTTTT GAGGAAAGTA GTACACCTAC AACTATTGAT GAATATTCAG 1321 ATAACAATCC TAGTTTTACA GATGACAGCA GTGGTGATGA AAGTTCTTAT TCCAACTGTG 1381 TTCCCATAGA CTTGTCTTGC AAACACCGAA CTGAAAAATC AGAATCTGAC CAACCTGTTT 1441 CCCTGGATAA CTTCACTCAA TCCTTGCTAA ACACTTGGGA TCCAAAAGTC CCAGATGTAG 1501 ATATCAAAGA AGATCAAGAT ACCTCAAAGA ATTCTAAGCT AAACTCACAC CAGAAAGTAA 1561 CACTTCTTCA ATTGCTACTT GGCCATAAGA ATGAAGAAAA TGTAGAAAAA AACACCAGCC 1621 CTCAGGGAGT ACACAATGAT GTGAGCAAGT TCAATACACA AAATTATGCA AGGACTTCTG 1681 TGATAGAAAG CCCCAGTACA AATCGGACTA CTCCAGTGAG CACTCCACCT TTACTTACAT 1741 CAAGCAAAGC AGGGTCTCCC ATCAATCTCT CTCAACACTC TCTGGTCATC AAATGGAATT 1801 CCCCACCATA TGTCTGCAGT ACTCAGTCTG AAAAGCTAAC AAATACTGCA TCTAACCACT 1861 CAATGGACCT TACAAAAAGC AAAGACCCAC CAGGAGAGAA ACCAGCCCAA AATGAAGGTG 1921 CACAGAACTC TGCAACGTTT AGTGCCAGTA AGCTGTTACA AAATTTAGCA CAATGTGGAA 1981 TGCAGTCATC CATGTCAGTG GAAGAGCAGA GACCCAGCAA ACAGCTGTTA ACTGGAAACA 2041 CAGATAAACC GATAGGTATG ATTGATAGAT TAAATAGCCC TTTGCTCTCA AATAAAACAA 2101 ATGCAGTTGA AGAAAATAAA GCATTTAGTA GTCAACCAAC AGGTCCTGAA CCAGGGCTTT 2161 CTGGTTCTGA AATAGAAAAT CTGCTTGAAA GACGTACTGT CCTCCAGTTG CTCCTGGGGA 2221 ACCCCAACAA AGGGAAGAGT GAAAAAAAAG AGAAAACTCC CTTAAGAGAT GAAAGTACTC 2281 AGGAACACTC AGAGAGAGCT TTAAGTGAAC AAATACTGAT GGTGAAAATA AAATCTGAGC 2341 CTTGTGATGA CTTACAAATT CCTAACACAA ATGTGCACTT GAGCCATGAT GCTAAGAGTG 2401 CCCCATTCTT GGGTATGGCT CCTGCTGTGC AGAGAAGCGC ACCTGCCTTA CCAGTGTCCG 2461 AAGACTTTAA ATCGGAGCCT GTTTCACCTC AGGATTTTTC TTTCTCCAAG AATGGTCTGC 2521 TAAGTCGATT GCTAAGACAA AATCAAGATA GTTACCTGGC AGATGATTCA GACAGGAGTC 2581 ACAGAAATAA TGAAATGGCA CTTCTAGAAT CAAAGAATCT TTGCATGGTC CCTAAGAAAA 2641 GGAAGCTTTA TACTGAGCCA TTAGAAAATC CATTTAAAAA GATGAAAAAC AACATTGTTG 2701 ATGCTGCAAA CAATCACAGT GCCCCAGAAG TACTGTATGG GTCCTTGCTT AACCAGGAAG 2761 AGCTGAAATT TAGCAGAAAT GATCTTGAAT TTAAATATCC TGCTGGTCAT GGCTCAGCCA 2821 GCGAAAGTGA ACACAGGAGT TGGGCCAGAG AGAGCAAAAG CTTTAATGTT CTGAAACAGC 2881 TGCTTCTCTC AGAAAACTGT GTGCGAGATT TGTCCCCGCA CAGAATTAAC TCTGTGGCTG 2941 ACAGTAAAAA GAAAGGACAC AAAAATAATG TGACCAACAG CAAACCTGAA TTTAGCATTT 3001 CTTCTTTAAA TGGACTGATG TACAGTTCCA CTCAGCCCAG CAGTTGCATG GATAACAGGA 3061 CATTTTCATA CCCAGGTGTA GTAAAAACTC CTGTGAGTCC TACTTTCCCT GAGCACTTGG 3121 GCTGTGCAGG GTCTAGACCA GAATCTGGGC TTTTGAATGG GTGTTCCATG CCCAGTGAGA 3181 AAGGACCCAT TAAGTGGGTT ATCACTGATG CGGAGAAGAA TGAGTATGAA AAAGACTCTC 3241 CAAGATTGAC CAAAACCAAC CCAATACTAT ATTACATGCT TCAAAAAGGA GGCAATTCTG 3301 TTACCAGTCG AGAAACACAA GACAAGGACA TTTGGAGGGA GGCTTCATCT GCTGAAAGTG 3361 TCTCACAGGT CACAGCCAAA GAAGAGTTAC TTCCTACTGC AGAAACGAAA GCTTCTTTCT 3421 TTAATTTAAG AAGCCCTTAC AATAGCCATA TGGGAAATAA TGCTTCTCGC CCACACAGCG 3481 CAAATGGAGA AGTTTATGGA CTTCTGGGAA GCGTGCTAAC GATAAAGAAA GAATCAGAAT 3541 ACCCAACTTT CTTGTACAAA GTtggcatta taagaaagca ttgcttatca atttgttgca 3601 acgaac