Construct: ORF ccsbBroadEn_07360

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF018197.1_s300c1, BRDN0000389791
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
USP10 (9100)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 9100 USP10 ubiquitin specific peptidas... NM_005153.3 99.8% 99.7% 603C>T;607T>C;610G>C
2 human 9100 USP10 ubiquitin specific peptidas... NM_001272075.2 99% 98.8% (many diffs)
3 human 9100 USP10 ubiquitin specific peptidas... XM_006721332.1 75.3% 75.1% (many diffs)
4 human 9100 USP10 ubiquitin specific peptidas... XM_011523443.1 75.3% 75.1% (many diffs)
5 human 9100 USP10 ubiquitin specific peptidas... XM_017023863.1 75.3% 75.1% (many diffs)
6 human 9100 USP10 ubiquitin specific peptidas... XM_017023864.1 75.3% 75.1% (many diffs)
7 human 9100 USP10 ubiquitin specific peptidas... XM_017023865.1 75.3% 75.1% (many diffs)
8 human 9100 USP10 ubiquitin specific peptidas... XM_017023866.2 75.3% 75.1% (many diffs)
9 human 9100 USP10 ubiquitin specific peptidas... XM_017023867.1 75.3% 75.1% (many diffs)
10 human 9100 USP10 ubiquitin specific peptidas... XM_017023868.1 75.3% 75.1% (many diffs)
11 human 9100 USP10 ubiquitin specific peptidas... XM_017023869.1 75.3% 75.1% (many diffs)
12 human 9100 USP10 ubiquitin specific peptidas... NR_073578.2 63.9% (many diffs)
13 human 9100 USP10 ubiquitin specific peptidas... NR_073577.2 40% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2460
ORF length:
2394
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC CCTCCACAGC CCGCAGTATA TTTTTGGAGA TTTTAGCCCT GATGAATTCA
121ATCAATTCTT TGTGACTCCT CGATCTTCAG TTGAGCTTCC TCCATACAGT GGAACAGTTC
181TGTGTGGCAC ACAGGCTGTG GATAAACTAC CTGATGGACA AGAATATCAG AGAATTGAGT
241TTGGTGTCGA TGAAGTCATT GAACCCAGTG ACACTTTGCC GAGAACCCCC AGCTACAGTA
301TTTCAAGCAC ACTGAACCCT CAGGCCCCTG AATTTATTCT CGGTTGTACA GCTTCCAAAA
361TAACCCCTGA TGGTATCACT AAAGAAGCAA GCTATGGCTC CATCGACTGC CAGTACCCAG
421GCTCTGCCCT CGCTTTGGAT GGAAGTTCTA ATGTGGAGGC GGAAGTTTTG GAAAATGATG
481GTGTCTCAGG TGGTCTTGGA CAAAGGGAGC GTAAAAAGAA GAAAAAGCGG CCACCTGGAT
541ATTACAGCTA TTTGAAAGAT GGTGGCGATG ATAGTATCTC CACAGAAGCC CTGGTCAATG
601GCCATGCCAA TTCAGCAGTC CCGAACAGTG TCAGTGCAGA GGATGCAGAA TTTATGGGTG
661ACATGCCTCC GCCACTTACG CCCAGGACTT GTAACAGCCC CCAGAACTCC ACAGACTCTG
721TCAGTGACAT TGTGCCTGAC AGTCCTTTCC CCGGAGCACT CGGCAGTGAC ACCAGGACTG
781CAGGGCAGCC AGAGGGGGGC CCCGGGGCTG ATTTTGGTCA GTCCTGCTTC CCTGCAGAGG
841CTGGCAGAGA CACCCTGTCA AGGACAGCTG GGGCTCAGCC CTGCGTTGGT ACCGATACTA
901CTGAAAACCT TGGAGTTGCT AATGGACAAA TACTTGAATC CTCGGGTGAG GGCACAGCTA
961CCAACGGGGT GGAGTTGCAC ACCACGGAAA GCATAGACTT GGACCCAACC AAACCCGAGA
1021GTGCATCACC TCCTGCTGAC GGCACGGGCT CTGCATCAGG CACCCTTCCT GTCAGCCAGC
1081CCAAGTCCTG GGCCAGCCTC TTTCATGATT CTAAGCCCTC TTCCTCCTCG CCGGTGGCCT
1141ATGTGGAAAC TAAGTATTCC CCTCCCGCCA TATCTCCCCT GGTTTCTGAA AAGCAGGTTG
1201AAGTCAAAGA AGGGCTTGTT CCGGTTTCAG AGGATCCTGT AGCCATAAAG ATTGCAGAGT
1261TGCTGGAGAA TGTAACCCTA ATCCATAAAC CAGTGTCGTT GCAACCCCGT GGGCTGATCA
1321ATAAAGGGAA CTGGTGCTAC ATTAATGCTA CACTGCAGGC ATTGGTTGCT TGCCCGCCGA
1381TGTACCACCT GATGAAGTTC ATTCCTCTGT ATTCCAAAGT GCAAAGGCCT TGTACGTCAA
1441CACCCATGAT AGACAGCTTT GTTCGGCTAA TGAATGAGTT CACTAATATG CCAGTACCTC
1501CAAAACCCCG ACAAGCTCTT GGAGATAAAA TCGTGAGGGA TATTCGCCCT GGAGCTGCCT
1561TTGAGCCCAC ATATATTTAC AGACTCCTGA CAGTTAACAA GTCAAGCCTG TCTGAAAAGG
1621GTCGACAAGA AGATGCTGAG GAATACTTAG GCTTCATTCT AAATGGACTT CATGAGGAAA
1681TGTTGAACCT AAAGAAGCTT CTCTCACCAA GTAATGAAAA ACTTACGATT TCCAACGGCC
1741CCAAAAACCA CTCGGTCAAT GAAGAAGAGC AGGAAGAACA AGGTGAAGGA AGCGAGGATG
1801AATGGGAACA AGTGGGCCCC CGGAACAAGA CTTCCGTCAC CCGCCAGGCG GATTTTGTTC
1861AGACTCCAAT CACCGGCATT TTTGGTGGAC ACATCAGGTC TGTGGTTTAC CAGCAGAGTT
1921CAAAAGAATC TGCCACTTTG CAGCCATTTT TCACGTTGCA GTTGGATATC CAGTCAGACA
1981AGATACGCAC AGTCCAGGAT GCACTGGAGA GCTTGGTGGC AAGAGAATCT GTCCAAGGTT
2041ATACCACAAA AACCAAACAA GAGGTTGAGA TAAGTCGAAG AGTGACTCTG GAAAAACTCC
2101CTCCTGTCCT CGTGCTGCAC CTGAAACGAT TCGTTTATGA GAAGACTGGT GGGTGCCAGA
2161AGCTTATCAA AAATATTGAA TATCCTGTGG ACTTGGAAAT TAGTAAAGAA CTGCTTTCTC
2221CAGGGGTTAA AAATAAGAAT TTTAAATGCC ACCGAACCTA TCGGCTCTTT GCAGTGGTCT
2281ACCATCACGG CAACAGTGCG ACGGGCGGCC ATTACACTAC AGACGTCTTC CAGATCGGTC
2341TGAATGGCTG GCTGCGCATC GATGACCAGA CAGTCAAGGT GATCAACCAG TACCAGGTGG
2401TGAAACCAAC TGCTGAACGC ACAGCCTACC TCCTGTATTA CCGCCGAGTG GACCTGCTGT
2461ACCCAACTTT CTTGTACAAA GTtggcatta taagaaagca ttgcttatca atttgttgca
2521acgaac

Download FASTA (ORF) (Full)

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