Construct: ORF ccsbBroadEn_07376

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016491.1_s300c1, BRDN0000394906
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
LRRFIP1 (9208)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 9208 LRRFIP1 LRR binding FLII interactin... NM_001137552.2 99.9% 99.8% 1686G>T
2 human 9208 LRRFIP1 LRR binding FLII interactin... NM_004735.4 96.9% 96.9% 408_409ins72;1614G>T
3 human 9208 LRRFIP1 LRR binding FLII interactin... NM_001137553.2 93% 92.9% 152_153ins96;312_313ins72;1518G>T
4 human 9208 LRRFIP1 LRR binding FLII interactin... XM_005246141.4 43.7% 33.2% (many diffs)
5 human 9208 LRRFIP1 LRR binding FLII interactin... NM_001137551.1 42.4% 32.6% (many diffs)
6 human 9208 LRRFIP1 LRR binding FLII interactin... XM_017005256.2 41% 31.9% (many diffs)
7 human 9208 LRRFIP1 LRR binding FLII interactin... XM_005246142.2 40.8% 30.3% (many diffs)
8 human 9208 LRRFIP1 LRR binding FLII interactin... XM_017005258.2 40.7% 31.7% (many diffs)
9 human 9208 LRRFIP1 LRR binding FLII interactin... NM_001137550.2 39.1% 30.4% (many diffs)
10 human 9208 LRRFIP1 LRR binding FLII interactin... XM_017005253.2 38.6% 30% (many diffs)
11 human 9208 LRRFIP1 LRR binding FLII interactin... XM_017005254.2 38.3% 29.8% (many diffs)
12 human 9208 LRRFIP1 LRR binding FLII interactin... XR_001739066.1 25.6% 1_94del;1780G>T;2519_9446del
13 human 9208 LRRFIP1 LRR binding FLII interactin... XR_001739057.1 25.1% (many diffs)
14 human 9208 LRRFIP1 LRR binding FLII interactin... XR_001739053.1 25% (many diffs)
15 human 9208 LRRFIP1 LRR binding FLII interactin... XR_001739054.1 24.9% (many diffs)
16 human 9208 LRRFIP1 LRR binding FLII interactin... XR_001739056.2 24.9% (many diffs)
17 human 9208 LRRFIP1 LRR binding FLII interactin... XR_001739068.1 24.8% (many diffs)
18 human 9208 LRRFIP1 LRR binding FLII interactin... XR_001739052.2 24.7% (many diffs)
19 human 9208 LRRFIP1 LRR binding FLII interactin... XR_001739067.1 24.6% (many diffs)
20 human 9208 LRRFIP1 LRR binding FLII interactin... XR_001739050.2 24.5% (many diffs)
21 human 9208 LRRFIP1 LRR binding FLII interactin... XR_001739049.2 24.4% (many diffs)
22 human 9208 LRRFIP1 LRR binding FLII interactin... XR_002959364.1 24.4% (many diffs)
23 human 9208 LRRFIP1 LRR binding FLII interactin... XR_001739061.1 24.4% (many diffs)
24 human 9208 LRRFIP1 LRR binding FLII interactin... XR_001739047.2 24.3% (many diffs)
25 human 9208 LRRFIP1 LRR binding FLII interactin... XR_001739059.2 24.2% (many diffs)
26 human 9208 LRRFIP1 LRR binding FLII interactin... XR_001739069.1 24.1% (many diffs)
27 human 9208 LRRFIP1 LRR binding FLII interactin... XR_001739045.2 24.1% (many diffs)
28 human 9208 LRRFIP1 LRR binding FLII interactin... XR_001739048.1 24% (many diffs)
29 human 9208 LRRFIP1 LRR binding FLII interactin... XR_001739043.1 24% (many diffs)
30 human 9208 LRRFIP1 LRR binding FLII interactin... XR_001739042.2 24% (many diffs)
31 human 9208 LRRFIP1 LRR binding FLII interactin... XR_001739055.2 23.9% (many diffs)
32 human 9208 LRRFIP1 LRR binding FLII interactin... XR_001739065.1 23.9% (many diffs)
33 human 9208 LRRFIP1 LRR binding FLII interactin... XR_001739060.1 23.9% (many diffs)
34 human 9208 LRRFIP1 LRR binding FLII interactin... XR_001739041.2 23.9% (many diffs)
35 human 9208 LRRFIP1 LRR binding FLII interactin... XR_001739039.2 23.8% (many diffs)
36 human 9208 LRRFIP1 LRR binding FLII interactin... XR_001739058.1 23.7% (many diffs)
37 human 9208 LRRFIP1 LRR binding FLII interactin... XR_001739051.2 23.7% (many diffs)
38 human 9208 LRRFIP1 LRR binding FLII interactin... XR_001739040.1 23.7% (many diffs)
39 human 9208 LRRFIP1 LRR binding FLII interactin... XR_001739062.1 23.6% (many diffs)
40 human 9208 LRRFIP1 LRR binding FLII interactin... XR_001739071.1 23.6% (many diffs)
41 human 9208 LRRFIP1 LRR binding FLII interactin... XR_001739072.1 23.2% (many diffs)
42 human 9208 LRRFIP1 LRR binding FLII interactin... XR_001739046.1 23.2% (many diffs)
43 human 9208 LRRFIP1 LRR binding FLII interactin... XR_001739070.1 23.2% (many diffs)
44 human 9208 LRRFIP1 LRR binding FLII interactin... XR_001739063.1 23.2% (many diffs)
45 human 9208 LRRFIP1 LRR binding FLII interactin... XR_001739044.2 23.1% (many diffs)
46 human 9208 LRRFIP1 LRR binding FLII interactin... XR_001739064.1 22.8% (many diffs)
47 human 27094 KCNMB3 potassium calcium-activated... NR_028135.1 22.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2493
ORF length:
2424
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GACCAGCCCC GCGGCCGCTC AAAGCCGGGA GATCGACTGT TTGAGCCCGG
121AAGCGCAGAA GCTGGCGGAA GCCCGGCTCG CTGCAAAACG GGCGGCCCGC GCGGAGGCTC
181GCGAGATCCG CATGAAGGAG CTGGAGCGGC AGCAGAAGGA GGAAGACAGT GAGCGCTACT
241CTCGTAGATC CAGAAGAAAC ACATCGGCTT CTGATGAAGA CGAGCGCATG TCAGTGGGTA
301GTCGTGGAAG CCTGAGGGTA GAAGAGAGAC CAGAAAAAGA TTTTACTGAG AAGGGGTCTC
361GTAACATGCC GGGCCTGTCT GCAGCCACGC TGGCCTCTCT GGGTGGGACT TCCTCTCGGA
421GAGGCAGCGG AGACACCTCC ATCTCCATCG ACACCGAGGC ATCCATCAGG GAAATCAAGG
481AACTCAATGA GTTAAAGGAC CAGATTCAGG ATGTAGAAGG CAAATACATG CAGGGATTGA
541AAGAGATGAA GGACTCTCTA GCAGAAGTTG AAGAGAAATA TAAGAAGGCT ATGGTTTCCA
601ATGCTCAGCT AGACAATGAA AAGACAAACT TCATGTACCA GGTTGATACC CTAAAAGATA
661TGTTGCTGGA GCTTGAAGAA CAGCTGGCTG AATCTAGGCG GCAGTACGAA GAGAAAAACA
721AAGAATTTGA AAGGGAAAAA CACGCCCACA GTATACTGCA ATTTCAGTTT GCTGAAGTCA
781AGGAGGCCCT GAAGCAAAGA GAGGAAATGC TCGAGAAACA TGGAATAATC CTAAATTCAG
841AAATAGCTAC CAATGGAGAG ACTTCCGACA CCCTCAATAA TGTTGGATAC CAAGGTCCTA
901CCAAGATGAC AAAAGAAGAG TTAAATGCCC TCAAGTCGAC AGGGGATGGG ACCCTAGGAA
961GAGCCAGTGA AGTGGAGGTG AAAAATGAAA TCGTGGCGAA TGTGGGGAAA AGAGAAATCT
1021TGCACAATAC TGAGAAAGAA CAACACACAG AGGACACAGT GAAGGACTGT GTGGACATAG
1081AGGTATTCCC TGCTGGTGAG AATACCGAGG ACCAGAAATC CTCTGAAGAC ACTGCCCCAT
1141TCCTAGGAAC CTTAGCAGGT GCTACCTATG AGGAACAGGT TCAAAGCCAA ATTCTTGAGA
1201GCAGTTCTCT CCCTGAAAAC ACAGTACAGG TTGAGTCAAA TGAGGTCATG GGTGCACCAG
1261ATGACAGGAC CAGAACTCCC CTTGAGCCAT CCAACTGTTG GAGTGACTTA GATGGTGGGA
1321ACCACACAGA GAATGTGGGA GAGGCAGCAG TGACTCAGGT TGAAGAGCAG GCAGGCACAG
1381TGGCCTCGTG TCCTTTAGGG CATAGTGATG ACACAGTTTA TCATGATGAC AAATGTATGG
1441TAGAGGTCCC CCAAGAGTTA GAGACAAGCA CAGGGCATAG TTTAGAGAAA GAATTCACCA
1501ACCAGGAAGC AGCTGAGCCC AAGGAGGTTC CAGCGCACAG TACAGAAGTA GGTAGGGATC
1561ACAACGAAGA AGAGGGTGAA GAAACAGGAT TAAGGGACGA GAAACCAATC AAGACAGAAG
1621TTCCTGGTTC TCCAGCAGGA ACTGAGGGCA ACTGTCAGGA AGCGACAGGT CCAAGTACAG
1681TAGACACTCA AAATGAACCC TTAGATATGA AAGAGCCCGA TGAAGAAAAG AGTGACCAAC
1741AGGGAGAGGC ATTTGACTCA TCGCAGAAGA AGACAAAGAA CAAGAAAAAG AAAAACAAGA
1801AGAAAAAATC CCCAGTACCC GTAGAAACCC TTAAAGATGT TAAAAAAGAG TTAACGTATC
1861AGAACACAGA TTTAAGTGAA ATTAAGGAAG AAGAGCAGGT AAAGTCTACT GACAGAAAGT
1921CAGCAGTGGA AGCCCAAAAC GAGGTGACTG AAAATCCAAA ACAGAAAATT GCAGCAGAAA
1981GCAGTGAAAA TGTTGATTGT CCGGAGAATC CTAAAATTAA GTTGGATGGA AAACTTGACC
2041AAGAAGGTGA TGATGTACAA ACAGCAGCTG AGGAGGTACT AGCTGATGGA GACACATTAG
2101ATTTTGAGGA TGACACCGTT CAATCATCAG GCCCGAGGGC TGGTGGTGAA GAATTAGATG
2161AAGGTGTTGC AAAAGATAAT GCTAAAATAG ATGGTGCCAC TCAAAGCAGT CCTGCAGAAC
2221CAAAGAGCGA AGACGCAGAT CGCTGCACCC TGCCCGAACA TGAAAGTCCC TCACAGGACA
2281TTAGTGATGC CTGTGAAGCA GAAAGTACAG AGAGGTGTGA GATGTCAGAA CATCCAAGTC
2341AGACCGTCAG GAAAGCTTTA GACAGCAATA GCCTAGAGAA CGATGACTTG TCGGCACCAG
2401GAAGAGAGCC AGGGCACTTC AATCCAGAAA GCAGAGAAGA TACCAGAGGA GGGAATGAGA
2461AGGGCAAAAG CAAAGAAGAC TGTACCATGT CCTTGCCAAC TTTCTTGTAC AAAGTtggca
2521ttataagaaa gcattgctta tcaatttgtt gcaacgaac

Download FASTA (ORF) (Full)