Transcript: Human XR_001739042.2

PREDICTED: Homo sapiens LRR binding FLII interacting protein 1 (LRRFIP1), transcript variant X4, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
LRRFIP1 (9208)
Length:
9991
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_001739042.2
NBCI Gene record:
LRRFIP1 (9208)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_001739042.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000013369 CGCACAGTACAGAAGTAGGTA pLKO.1 2105 3UTR 100% 3.000 4.200 N LRRFIP1 n/a
2 TRCN0000351054 CAGATCAGCGACCTCAAATTT pLKO_005 8927 3UTR 100% 15.000 10.500 N Lrrfip1 n/a
3 TRCN0000340251 ACATGGAATAATCCTAAATTC pLKO_005 1389 3UTR 100% 13.200 9.240 N Lrrfip1 n/a
4 TRCN0000013368 CCCAGATTAGAAAGACATATT pLKO.1 3254 3UTR 100% 13.200 9.240 N LRRFIP1 n/a
5 TRCN0000013370 CTCTCGTAGATCCAGAAGAAA pLKO.1 336 3UTR 100% 5.625 3.938 N LRRFIP1 n/a
6 TRCN0000166201 CATGGTGAAACCCTGTCTCTA pLKO.1 4003 3UTR 100% 4.950 2.475 Y ORAI2 n/a
7 TRCN0000013371 CCAAGTACAGTAGACACTCAA pLKO.1 2242 3UTR 100% 4.950 2.475 Y LRRFIP1 n/a
8 TRCN0000340187 GAGCGCTACTCTCGTAGATTC pLKO_005 328 3UTR 100% 10.800 15.120 N Lrrfip1 n/a
9 TRCN0000179120 CAACATGGTGAAACCCTGTTT pLKO.1 4000 3UTR 100% 4.950 2.475 Y LOC339059 n/a
10 TRCN0000138772 GCAGGAGAATCGCTTGAACTT pLKO.1 4093 3UTR 100% 4.950 2.475 Y DCAF11 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_001739042.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_07376 pDONR223 100% 24% None (many diffs) n/a
2 ccsbBroad304_07376 pLX_304 0% 24% V5 (many diffs) n/a
3 TRCN0000470027 TGTCTAACATCGACCAGAGACGTC pLX_317 17% 24% V5 (many diffs) n/a
4 ccsbBroadEn_11348 pDONR223 100% 3.1% None 1_8890del;9206_9991del n/a
5 ccsbBroad304_11348 pLX_304 0% 3.1% V5 1_8890del;9206_9991del n/a
6 TRCN0000466304 TGCATCGCAGTTCCCCTTGCGCGT pLX_317 100% 3.1% V5 1_8890del;9206_9991del n/a
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