Construct: ORF ccsbBroadEn_07394
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF012201.1_s300c1, BRDN0000393484
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SNAP29 (9342)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 9342 | SNAP29 | synaptosome associated prot... | NM_004782.4 | 99.8% | 100% | 18A>G |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 840
- ORF length:
- 774
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTC AGCTTACCCT AAGAGCTACA ATCCGTTCGA CGACGACGGG GAGGACGAAG 121 GCGCCCGGCC GGCCCCTTGG AGGGACGCCC GAGACCTCCC CGACGGGCCC GACGCGCCCG 181 CGGACAGGCA GCAGTACTTG CGGCAGGAGG TCCTCCGCAG GGCTGAGGCC ACGGCCGCCA 241 GCACCAGCAG GTCCCTGGCC CTCATGTACG AGTCCGAGAA GGTTGGGGTC GCCTCTTCCG 301 AGGAGCTCGC CCGTCAGCGA GGAGTCCTGG AGCGCACAGA GAAGATGGTG GACAAGATGG 361 ACCAAGATTT GAAGATCAGC CAGAAACACA TCAATAGCAT TAAGAGCGTG TTTGGGGGGC 421 TGGTCAATTA CTTCAAATCC AAACCAGTAG AGACCCCACC TGAACAGAAT GGCACCCTCA 481 CCTCCCAGCC CAACAACAGA TTGAAAGAAG CTATAAGTAC AAGTAAAGAA CAGGAAGCAA 541 AGTACCAGGC CAGCCACCCA AACCTTAGAA AGCTGGATGA TACAGACCCT GTCCCCAGAG 601 GGGCTGGTTC TGCCATGAGT ACTGATGCTT ACCCAAAGAA CCCACACCTT CGAGCCTATC 661 ACCAGAAGAT CGACAGCAAC CTAGATGAGC TGTCCATGGG ACTGGGTCGT CTGAAGGACA 721 TAGCCCTGGG GATGCAGACA GAAATTGAGG AGCAAGATGA CATTCTTGAC CGGCTGACAA 781 CCAAAGTGGA CAAGTTAGAT GTCAACATAA AAAGCACAGA AAGAAAAGTT CGACAACTCT 841 GCCCAACTTT CTTGTACAAA GTtggcatta taagaaagca ttgcttatca atttgttgca 901 acgaac