Construct: ORF ccsbBroadEn_07404

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF012542.1_s300c1, BRDN0000389839
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PLAA (9373)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 9373 PLAA phospholipase A2 activating... NM_001031689.3 99.9% 99.8% 2375T>A
2 human 9373 PLAA phospholipase A2 activating... NM_001321546.1 97% 96.9% 1410_1411ins69;2306T>A
3 human 9373 PLAA phospholipase A2 activating... XM_011518072.3 64.1% 62.9% (many diffs)
4 human 9373 PLAA phospholipase A2 activating... XM_017015319.2 61.2% 60.7% (many diffs)
5 human 9373 PLAA phospholipase A2 activating... XR_001746420.2 49.3% (many diffs)
6 mouse 18786 Plaa phospholipase A2, activatin... NM_172695.2 90.1% 93.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2451
ORF length:
2385
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAGAAAG
61TTGGCATGAC GAGCGGCGCA ACCAGGTACC GGCTGAGCTG CTCGCTCCGG GGCCACGAGC
121TGGACGTACG GGGCCTGGTG TGCTGCGCCT ATCCGCCGGG AGCCTTTGTG TCCGTGTCCC
181GAGACCGCAC CACCCGCCTC TGGGCCCCAG ACAGTCCAAA CAGGAGCTTT ACAGAAATGC
241ACTGTATGAG TGGCCATTCC AATTTTGTAT CTTGTGTATG CATCATACCC TCAAGTGACA
301TCTACCCTCA TGGCCTAATT GCCACCGGTG GAAATGACCA CAATATATGC ATTTTCTCAC
361TGGACAGTCC AATGCCACTT TATATTCTAA AAGGCCACAA AAATACTGTT TGTAGTCTAT
421CATCTGGAAA ATTTGGGACA TTACTTAGTG GTTCATGGGA CACCACTGCT AAAGTCTGGC
481TGAATGACAA GTGCATGATG ACCTTGCAGG GTCATACAGC TGCAGTGTGG GCGGTAAAGA
541TCTTACCTGA ACAGGGCTTA ATGTTGACTG GATCAGCAGA CAAGACTGTT AAACTGTGGA
601AGGCTGGAAG ATGTGAGAGG ACTTTTTCAG GGCATGAAGA CTGTGTAAGA GGTTTGGCAA
661TTTTGAGTGA AACAGAATTT CTTTCCTGTG CAAATGATGC TAGTATTAGA AGGTGGCAAA
721TCACTGGCGA GTGTCTTGAA GTATATTATG GACATACAAA TTATATTTAT AGCATATCCG
781TTTTTCCAAA TTGTAGAGAC TTTGTGACAA CAGCAGAGGA CAGATCTCTG AGAATCTGGA
841AACATGGGGA ATGTGCTCAA ACTATCCGAC TTCCAGCTCA GTCTATATGG TGCTGCTGTG
901TGCTCGACAA TGGTGACATT GTGGTTGGTG CGAGTGATGG CATTATTAGA GTGTTTACAG
961AATCAGAAGA TCGAACAGCA AGTGCTGAAG AAATCAAGGC TTTTGAAAAA GAACTGTCTC
1021ACGCAACCAT TGATTCTAAA ACTGGCGATT TAGGGGACAT CAATGCTGAG CAGCTTCCTG
1081GGAGGGAACA TCTTAATGAA CCTGGTACTA GAGAAGGACA GACTCGTCTA ATCAGAGATG
1141GGGAGAAAGT CGAAGCCTAT CAGTGGAGTG TTAGTGAAGG GAGGTGGATA AAAATTGGTG
1201ATGTTGTTGG CTCATCTGGT GCTAATCAGC AAACATCTGG AAAAGTTTTA TATGAAGGGA
1261AAGAATTTGA TTATGTTTTC TCAATTGATG TCAATGAAGG TGGACCATCA TATAAATTGC
1321CATATAATAC CAGTGATGAC CCTTGGTTAA CTGCATACAA CTTCTTACAG AAGAATGATT
1381TGAATCCTAT GTTTCTGGAT CAAGTAGCTA AATTTATTAT TGATAACACA AAAGGTCAAA
1441TGTTGGGACT TGGGAATCCC AGCTTTTCAG ATCCATTTAC AGGTGGTGGT CGGTATGTTC
1501CGGGCTCTTC GGGATCTTCT AACACACTAC CCACAGCAGA TCCTTTTACA GGTGCTGGTC
1561GTTATGTACC AGGTTCTGCA AGTATGGGAA CTACCATGGC CGGAGTTGAT CCATTTACAG
1621GGAATAGTGC CTACCGATCA GCTGCATCTA AAACAATGAA TATTTATTTC CCTAAAAAAG
1681AGGCTGTCAC ATTTGACCAA GCAAACCCTA CACAAATATT AGGTAAACTG AAGGAACTTA
1741ATGGAACTGC ACCTGAAGAG AAGAAGTTAA CTGAGGATGA CTTGATACTT CTTGAGAAGA
1801TACTGTCTCT AATATGTAAT AGTTCTTCAG AAAAACCCAC AGTCCAGCAA CTTCAGATTT
1861TGTGGAAAGC TATTAACTGT CCTGAAGATA TTGTCTTTCC TGCACTTGAC ATTCTTCGGT
1921TGTCAATTAA ACACCCCAGT GTGAATGAGA ACTTCTGCAA TGAAAAGGAA GGGGCTCAGT
1981TCAGCAGTCA TCTTATCAAT CTTCTGAACC CTAAAGGAAA GCCAGCAAAC CAGCTGCTTG
2041CTCTCAGGAC TTTTTGCAAT TGTTTTGTTG GCCAGGCAGG ACAAAAACTC ATGATGTCCC
2101AGAGGGAATC ACTGATGTCC CATGCAATAG AACTGAAATC AGGGAGCAAT AAGAACATTC
2161ACATTGCTCT GGCTACATTG GCCCTGAACT ATTCTGTTTG TTTTCATAAA GACCATAACA
2221TTGAAGGGAA AGCCCAATGT TTGTCACTAA TTAGCACAAT CTTGGAAGTA GTACAAGACC
2281TAGAAGCCAC TTTTAGACTT CTTGTGGCTC TTGGAACACT TATCAGTGAT GATTCAAATG
2341CTGTACAATT AGCCAAGTCT TTAGGTGTTG ATTCTCAAAT AAAAAAGTAT TCCTCAGTAT
2401CAGAACCAGC TAAAGTAAGT GAATGCTGTA GATTTATCCA AAATTTGCTG TACCCAACTT
2461TCTTGTACAA AGTtggcatt ataagaaagc attgcttatc aatttgttgc aacgaac

Download FASTA (ORF) (Full)

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