Construct: ORF ccsbBroadEn_07589
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF015659.1_s300c1, BRDN0000386257
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CLEC4M (10332)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 10332 | CLEC4M | C-type lectin domain family... | NM_014257.5 | 99.9% | 99.7% | 4A>T |
| 2 | human | 10332 | CLEC4M | C-type lectin domain family... | XM_006722611.2 | 99.6% | 99.4% | 4A>T;45_46insGAA |
| 3 | human | 10332 | CLEC4M | C-type lectin domain family... | NM_001144910.2 | 94.1% | 93.9% | 4A>T;353_354ins69 |
| 4 | human | 10332 | CLEC4M | C-type lectin domain family... | NM_001144905.2 | 93.9% | 93.7% | 4A>T;45_46insGAA;350_351ins69 |
| 5 | human | 10332 | CLEC4M | C-type lectin domain family... | XM_006722612.3 | 92.8% | 92.7% | 4A>T;128_129ins84 |
| 6 | human | 10332 | CLEC4M | C-type lectin domain family... | XM_006722613.3 | 92.8% | 92.7% | 4A>T;45_46ins84 |
| 7 | human | 10332 | CLEC4M | C-type lectin domain family... | NM_001144909.2 | 88.3% | 88.2% | 4A>T;491_492ins138 |
| 8 | human | 10332 | CLEC4M | C-type lectin domain family... | NM_001144904.2 | 87.1% | 86.9% | 4A>T;45_46ins84;269_270ins69 |
| 9 | human | 10332 | CLEC4M | C-type lectin domain family... | XR_936147.2 | 85.9% | 1_118del;122A>T;1316_1392del | |
| 10 | human | 10332 | CLEC4M | C-type lectin domain family... | XM_006722614.3 | 85.8% | 85.7% | 4A>T;45_46ins168 |
| 11 | human | 30835 | CD209 | CD209 molecule | NM_021155.4 | 84.2% | 79.3% | (many diffs) |
| 12 | human | 30835 | CD209 | CD209 molecule | NM_001144897.2 | 82.8% | 77.8% | (many diffs) |
| 13 | human | 10332 | CLEC4M | C-type lectin domain family... | NM_001144907.2 | 82.7% | 80.9% | (many diffs) |
| 14 | human | 10332 | CLEC4M | C-type lectin domain family... | XM_006722615.2 | 81.1% | 78.4% | 4A>T;933_934ins113;972_973ins112 |
| 15 | human | 30835 | CD209 | CD209 molecule | NM_001144896.2 | 78.8% | 74.2% | (many diffs) |
| 16 | human | 30835 | CD209 | CD209 molecule | NM_001144894.2 | 75.1% | 72.3% | (many diffs) |
| 17 | human | 10332 | CLEC4M | C-type lectin domain family... | XR_430125.2 | 74.4% | 1_118del;122A>T;1316_1606del | |
| 18 | human | 10332 | CLEC4M | C-type lectin domain family... | NM_001144911.2 | 74.1% | 71.4% | (many diffs) |
| 19 | human | 10332 | CLEC4M | C-type lectin domain family... | NM_001144906.2 | 65.4% | 64.1% | (many diffs) |
| 20 | human | 30835 | CD209 | CD209 molecule | NM_001144895.2 | 64.8% | 59.8% | (many diffs) |
| 21 | human | 10332 | CLEC4M | C-type lectin domain family... | NM_001144908.2 | 58% | 55.3% | (many diffs) |
| 22 | human | 30835 | CD209 | CD209 molecule | NM_001144893.2 | 55.7% | 52.8% | (many diffs) |
| 23 | human | 30835 | CD209 | CD209 molecule | XM_005272472.4 | 54.4% | 49% | (many diffs) |
| 24 | human | 10332 | CLEC4M | C-type lectin domain family... | NR_026707.2 | 52.2% | (many diffs) | |
| 25 | human | 30835 | CD209 | CD209 molecule | NM_001144899.2 | 48.8% | 43.5% | (many diffs) |
| 26 | human | 10332 | CLEC4M | C-type lectin domain family... | NR_026708.2 | 47.3% | (many diffs) | |
| 27 | human | 10332 | CLEC4M | C-type lectin domain family... | NR_026709.2 | 44.3% | (many diffs) | |
| 28 | human | 10332 | CLEC4M | C-type lectin domain family... | XR_001753584.1 | 40.3% | (many diffs) | |
| 29 | human | 10332 | CLEC4M | C-type lectin domain family... | XR_001753583.1 | 40.2% | (many diffs) | |
| 30 | human | 30835 | CD209 | CD209 molecule | NR_026692.2 | 24.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1263
- ORF length:
- 1197
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTG TGACTCCAAG GAACCAAGGG TGCAGCAGCT GGGCCTCCTG GAAGAAGATC 121 CAACAACCAG TGGCATCAGA CTTTTTCCAA GAGACTTTCA ATTCCAGCAG ATACATGGCC 181 ACAAGAGCTC TACAGGGTGT CTTGGCCATG GCGCCCTGGT GCTGCAACTC CTCTCCTTCA 241 TGCTCTTGGC TGGGGTCCTG GTGGCCATCC TTGTCCAAGT GTCCAAGGTC CCCAGCTCCC 301 TAAGTCAGGA ACAATCCGAG CAAGACGCAA TCTACCAGAA CCTGACCCAG CTTAAAGCTG 361 CAGTGGGTGA GCTCTCAGAG AAATCCAAGC TGCAGGAGAT CTACCAGGAG CTGACCCAGC 421 TGAAGGCTGC AGTGGGTGAG TTGCCAGAGA AATCCAAGCT GCAGGAGATC TACCAGGAGC 481 TGACCCGGCT GAAGGCTGCA GTGGGTGAGT TGCCAGAGAA ATCCAAGCTG CAGGAGATCT 541 ACCAGGAGCT GACCCGGCTG AAGGCTGCAG TGGGTGAGTT GCCAGAGAAA TCCAAGCTGC 601 AGGAGATCTA CCAGGAGCTG ACCCGGCTGA AGGCTGCAGT GGGTGAGTTG CCAGAGAAAT 661 CCAAGCTGCA GGAGATCTAC CAGGAGCTGA CGGAGCTGAA GGCTGCAGTG GGTGAGTTGC 721 CAGAGAAATC CAAGCTGCAG GAGATCTACC AGGAGCTGAC CCAGCTGAAG GCTGCAGTGG 781 GTGAGTTGCC AGACCAGTCC AAGCAGCAGC AAATCTATCA AGAACTGACC GATTTGAAGA 841 CTGCATTTGA ACGCCTGTGC CGCCACTGTC CCAAGGACTG GACATTCTTC CAAGGAAACT 901 GTTACTTCAT GTCTAACTCC CAGCGGAACT GGCACGACTC CGTCACCGCC TGCCAGGAAG 961 TGAGGGCCCA GCTCGTCGTA ATCAAAACTG CTGAGGAGCA GAACTTCCTA CAGCTGCAGA 1021 CTTCCAGGAG TAACCGCTTC TCCTGGATGG GACTTTCAGA CCTAAATCAG GAAGGCACGT 1081 GGCAATGGGT GGACGGCTCA CCTCTGTCAC CCAGCTTCCA GCGGTACTGG AACAGTGGAG 1141 AACCCAACAA TAGCGGGAAT GAAGACTGTG CGGAATTTAG TGGCAGTGGC TGGAACGACA 1201 ATCGATGTGA CGTTGACAAT TACTGGATCT GCAAAAAGCC CGCAGCCTGC TTCAGAGACG 1261 AATACCCAAC TTTCTTGTAC AAAGTtggca ttataagaaa gcattgctta tcaatttgtt 1321 gcaacgaac