Construct: ORF ccsbBroadEn_07632
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF016045.1_s300c1, BRDN0000388940
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- PROCR (10544)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 10544 | PROCR | protein C receptor | NM_006404.5 | 99.8% | 99.5% | 655A>G |
| 2 | human | 10544 | PROCR | protein C receptor | XM_011528496.1 | 84.8% | 84% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 780
- ORF length:
- 714
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTT GACAACATTG CTGCCGATAC TGCTGCTGTC TGGCTGGGCC TTTTGTAGCC 121 AAGACGCCTC AGATGGCCTC CAAAGACTTC ATATGCTCCA GATCTCCTAC TTCCGCGACC 181 CCTATCACGT GTGGTACCAG GGCAACGCGT CGCTGGGGGG ACACCTAACG CACGTGCTGG 241 AAGGCCCAGA CACCAACACC ACGATCATTC AGCTGCAGCC CTTGCAGGAG CCCGAGAGCT 301 GGGCGCGCAC GCAGAGTGGC CTGCAGTCCT ACCTGCTCCA GTTCCACGGC CTCGTGCGCC 361 TGGTGCACCA GGAGCGGACC TTGGCCTTTC CTCTGACCAT CCGCTGCTTC CTGGGCTGTG 421 AGCTGCCTCC CGAGGGCTCT AGAGCCCATG TCTTCTTCGA AGTGGCTGTG AATGGGAGCT 481 CCTTTGTGAG TTTCCGGCCG GAGAGAGCCT TGTGGCAGGC AGACACCCAG GTCACCTCCG 541 GAGTGGTCAC CTTCACCCTG CAGCAGCTCA ATGCCTACAA CCGCACTCGG TATGAACTGC 601 GGGAATTCCT GGAGGACACC TGTGTGCAGT ATGTGCAGAA ACATATTTCC GCGGAAAACA 661 CGAAAGGGAG CCAAACAAGC CGCTCCTACA CTTCGCTGGT CCTGGGCGTC CTGGTGGGCG 721 GTTTCATCAT TGCTGGTGTG GCTGTAGGCA TCTTCCTGTG CACAGGTGGA CGGCGATGTT 781 ACCCAACTTT CTTGTACAAA GTtggcatta taagaaagca ttgcttatca atttgttgca 841 acgaac