Construct: ORF ccsbBroadEn_07697
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008965.1_s300c1, BRDN0000455929
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CFHR4 (10877)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 10877 | CFHR4 | complement factor H related 4 | NM_006684.5 | 99.2% | 99.6% | (many diffs) |
| 2 | human | 10877 | CFHR4 | complement factor H related 4 | XM_017000114.1 | 83% | 79% | (many diffs) |
| 3 | human | 10878 | CFHR3 | complement factor H related 3 | NM_001166624.1 | 72.6% | 61.8% | (many diffs) |
| 4 | human | 10878 | CFHR3 | complement factor H related 3 | NM_021023.5 | 66.6% | 63.5% | (many diffs) |
| 5 | human | 10877 | CFHR4 | complement factor H related 4 | XM_017000113.1 | 65.2% | 58.4% | (many diffs) |
| 6 | human | 10877 | CFHR4 | complement factor H related 4 | XM_017000112.1 | 63.8% | 57.2% | (many diffs) |
| 7 | human | 10877 | CFHR4 | complement factor H related 4 | XM_017000110.1 | 62.3% | 61.6% | (many diffs) |
| 8 | human | 10877 | CFHR4 | complement factor H related 4 | XM_017000111.1 | 57.6% | 51.6% | (many diffs) |
| 9 | human | 10877 | CFHR4 | complement factor H related 4 | XM_006711129.3 | 56.4% | 53.6% | (many diffs) |
| 10 | human | 10877 | CFHR4 | complement factor H related 4 | NM_001201551.2 | 55.7% | 53% | (many diffs) |
| 11 | human | 10877 | CFHR4 | complement factor H related 4 | NM_001201550.3 | 55.6% | 57.2% | (many diffs) |
| 12 | human | 10878 | CFHR3 | complement factor H related 3 | XR_426757.2 | 47.9% | (many diffs) | |
| 13 | human | 10878 | CFHR3 | complement factor H related 3 | XR_241062.3 | 45.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1062
- ORF length:
- 993
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GTTGTTACTA ATCAATGTCA TTCTGACCTT GTGGGTTTCC TGTGCTAATG 121 GACAAGAAGT GAAACCTTGT GATTTTCCAG AAATTCAACA TGGAGGTCTA TATTATAAGA 181 GTTTGCGTAG ACTATACTTT CCAGCAGCTG CAGGACAATC TTACTCCTAT TACTGTGACC 241 AAAATTTTGT GACTCCTTCA GGAAGTTACT GGGATTACAT TCACTGCACA CAAGATGGGT 301 GGTTGCCAAC AGTCCCATGC CTCAGAACAT GCTCAAAATC AGATATAGAA ATTGAAAATG 361 GATTCATTTC TGAATCTTCC TCTATTTATA TTTTAAATAA AGAAATACAA TATAAATGTA 421 AACCAGGATA TGCAACAGCA GATGGAAATT CTTCAGGTTC AATTACATGT TTGCAAAATG 481 GATGGTCAGC ACAACCAATT TGCATTAAAT TTTGTGATAT GCCTGTTTTT GAGAATTCCA 541 GAGCCAAGAG TAATGGCATG CGGTTTAAGC TCCATGACAC ATTGGACTAC GAATGCTACG 601 ATGGATATGA AATCAGTTAT GGAAACACCA CAGGTTCCAT AGTGTGTGGT GAAGATGGGT 661 GGTCCCATTT CCCAACATGT TATAATTCTT CAGAAAAGTG TGGGCCTCCT CCACCTATTA 721 GCAATGGTGA TACCACCTCC TTTCTACTAA AAGTGTATGT GCCACAGTCA AGAGTCGAGT 781 ACCAATGCCA GTCCTACTAT GAACTTCAGG GTTCTAATTA TGTAACATGT AGTAATGGAG 841 AGTGGTCGGA ACCACCAAGA TGCATACATC CATGTATAAT AACTGAAGAA AACATGAATA 901 AAAATAACAT ACAGTTAAAA GGAAAAAGTG ACATAAAATA TTATGCAAAA ACAGGGGATA 961 CCATTGAATT TATGTGTAAA TTGGGATATA ATGCGAATAC ATCAGTTCTA TCATTTCAAG 1021 CAGTGTGTAG GGAAGGCATA GTGGAATACC CCAGATGCGA ATTGCCAACT TTCTTGTACA 1081 AAGTTGGcat tataagaaag cattgcttat caatttgttg caacgaac