Construct: ORF ccsbBroadEn_07704

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF000979.1_s300c1, BRDN0000391871
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SUB1 (10923)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 10923 SUB1 SUB1 regulator of transcrip... NM_006713.4 99.7% 99.2% 377A>C
2 human 10923 SUB1 SUB1 regulator of transcrip... XM_011513944.3 99.7% 99.2% 377A>C
3 human 10923 SUB1 SUB1 regulator of transcrip... XM_017008986.1 99.7% 99.2% 377A>C
4 human 10923 SUB1 SUB1 regulator of transcrip... XM_017008987.1 99.7% 99.2% 377A>C
5 mouse 20024 Sub1 SUB1 homolog (S. cerevisiae) NM_011294.3 87.7% 92.9% (many diffs)
6 mouse 20024 Sub1 SUB1 homolog (S. cerevisiae) XM_006520042.3 87.7% 92.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
447
ORF length:
381
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGCC TAAATCAAAG GAACTTGTTT CTTCAAGCTC TTCTGGCAGT GATTCTGACA
121GTGAGGTTGA CAAAAAGTTA AAGAGGAAAA AGCAAGTTGC TCCAGAAAAA CCTGTAAAGA
181AACAAAAGAC AGGTGAGACT TCGAGAGCCC TGTCATCTTC TAAACAGAGC AGCAGCAGCA
241GAGATGATAA CATGTTTCAG ATTGGGAAAA TGAGGTACGT TAGTGTTCGC GATTTTAAAG
301GCAAAGTGCT AATTGATATT AGAGAATATT GGATGGATCC TGAAGGTGAA ATGAAACCAG
361GAAGAAAAGG TATTTCTTTA AATCCAGAAC AATGGAGCCA GCTGAAGGAA CAGATTTCTG
421ACATTGATGA TGCAGTAAGA ACACTGTACC CAACTTTCTT GTACAAAGTt ggcattataa
481gaaagcattg cttatcaatt tgttgcaacg aac

Download FASTA (ORF) (Full)