Construct: ORF ccsbBroadEn_07767
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF011672.1_s300c1, BRDN0000389779
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- PKP3 (11187)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 11187 | PKP3 | plakophilin 3 | NM_007183.4 | 99.8% | 100% | (many diffs) |
| 2 | human | 11187 | PKP3 | plakophilin 3 | NM_001303029.2 | 97.3% | 96.6% | (many diffs) |
| 3 | mouse | 56460 | Pkp3 | plakophilin 3 | NM_019762.2 | 86.7% | 93.8% | (many diffs) |
| 4 | mouse | 56460 | Pkp3 | plakophilin 3 | NM_001162924.1 | 83.8% | 89.7% | (many diffs) |
| 5 | mouse | 56460 | Pkp3 | plakophilin 3 | XM_017322376.1 | 78.6% | 85.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2457
- ORF length:
- 2391
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCA GGACGGTAAC TTCCTGCTGT CGGCCCTGCA GCCTGAGGCC GGCGTGTGCT 121 CCCTGGCGCT GCCCTCTGAC CTGCAGCTGG ACCGCCGGGG CGCCGAGGGG CCGGAGGCCG 181 AGCGGCTGCG GGCAGCCCGC GTCCAGGAGC AGGTCCGCGC CCGCCTCTTG CAGCTGGGAC 241 AGCAGCCGCG GCACAACGGG GCCGCTGAGC CCGAGCCTGA GGCCGAGACT GCCAGAGGCA 301 CATCCAGGGG GCAGTACCAC ACCCTGCAGG CTGGCTTCAG CTCTCGCTCT CAGGGCCTGA 361 GTGGGGACAA GACCTCGGGC TTCCGGCCCA TCGCCAAGCC GGCCTACAGC CCAGCCTCCT 421 GGTCCTCCCG CTCCGCCGTG GATCTGAGCT GCAGTCGGAG GCTGAGTTCA GCCCACAATG 481 GGGGCAGCGC CTTTGGGGCC GCTGGGTACG GGGGTGCCCA GCCCACCCCT CCCATGCCCA 541 CCAGGCCCGT GTCCTTCCAT GAGCGCGGTG GGGTTGGGAG CCGGGCCGAC TATGACACAC 601 TCTCCCTGCG CTCGCTGCGG CTGGGGCCCG GGGGCCTGGA CGACCGCTAC AGCCTGGTGT 661 CTGAGCAGCT GGAGCCCGCG GCCACCTCCA CCTACAGGGC CTTTGCGTAC GAGCGCCAGG 721 CCAGCTCCAG CTCCAGCCGG GCAGGGGGGC TGGACTGGCC CGAGGCCACT GAGGTTTCCC 781 CGAGCCGGAC CATCCGTGCC CCTGCCGTGC GGACCCTGCA GCGATTCCAG AGCAGCCACC 841 GGAGCCGCGG GGTAGGCGGG GCAGTGCCGG GGGCCGTCCT GGAGCCAGTG GCTCGAGCGC 901 CATCTGTGCG CAGCCTCAGC CTCAGCCTGG CTGACTCGGG CCACCTGCCG GACGTGCATG 961 GGTTCAACAG CTACGGTAGC CACCGAACCC TGCAGAGACT CAGCAGCGGT TTTGATGACA 1021 TTGACCTGCC CTCAGCAGTC AAGTACCTCA TGGCTTCAGA CCCCAACCTG CAGGTGCTGG 1081 GAGCGGCCTA CATCCAGCAC AAGTGCTACA GCGATGCAGC CGCCAAGAAG CAGGCCCGCA 1141 GCCTTCAGGC CGTGCCTAGG CTGGTGAAGC TCTTCAACCA CGCCAACCAG GAAGTGCAGC 1201 GCCATGCCAC AGGTGCCATG CGCAACCTCA TCTACGACAA CGCTGACAAC AAGCTGGCCC 1261 TGGTGGAGGA GAACGGGATC TTCGAGCTGC TGCGGACACT GCGGGAGCAG GATGATGAGC 1321 TTCGCAAAAA TGTCACAGGG ATCCTGTGGA ACCTTTCATC CAGCGACCAC CTGAAGGACC 1381 GCCTGGCCAG AGACACGCTG GAGCAGCTCA CAGACCTGGT GTTGAGCCCC CTGTCGGGGG 1441 CTGGGGGTCC CCCCCTCATC CAGCAGAACG CCTCGGAGGC GGAGATCTTC TACAACGCCA 1501 CCGGCTTCCT CAGGAACCTC AGCTCAGCCT CTCAGGCCAC TCGCCAGAAG ATGCGGGAGT 1561 GCCACGGGCT GGTGGACGCC CTGGTCACCT CTATCAACCA CGCCCTGGAC GCGGGCAAAT 1621 GCGAGGACAA GAGCGTGGAG AACGCGGTGT GCGTCCTGCG GAACCTGTCC TACCGCCTCT 1681 ACGACGAGAT GCCGCCGTCC GCGCTGCAGC GGCTGGAGGG TCGCGGCCGC AGGGACCTGG 1741 CGGGGGCGCC GCCGGGAGAG GTCGTGGGCT GCTTCACGCC GCAGAGCCGG CGGCTGCGCG 1801 AGCTGCCCCT CGCCGCCGAT GCGCTCACCT TCGCGGAGGT GTCCAAGGAC CCCAAGGGCC 1861 TCGAGTGGCT GTGGAGCCCC CAGATCGTGG GGCTGTACAA CCGGCTGCTG CAGCGCTGCG 1921 AGCTCAACCG GCACACGACG GAGGCGGCCG CCGGGGCGCT GCAGAACATC ACGGCAGGCG 1981 ACCGCAGGTG GGCGGGGGTG CTGAGCCGCC TGGCCCTGGA GCAGGAGCGT ATTCTGAACC 2041 CCCTGCTAGA CCGTGTCAGG ACCGCCGACC ACCACCAGCT GCGCTCACTG ACTGGCCTCA 2101 TCCGAAACCT GTCTCGGAAC GCTAGGAACA AGGACGAGAT GTCCACGAAG GTGGTGAGCC 2161 ACCTGATCGA GAAGCTGCCA GGCAGCGTGG GTGAGAAGTC GCCCCCAGCC GAGGTGCTGG 2221 TCAACATCAT AGCTGTGCTC AACAACCTGG TGGTGGCCAG CCCCATCGCT GCCCGAGACC 2281 TGCTGTATTT TGACGGACTC CGAAAGCTCA TCTTCATCAA GAAGAAGCGG GACAGCCCCG 2341 ACAGTGAGAA GTCCTCCCGG GCAGCATCCA GCCTCCTGGC CAACCTGTGG CAGTACAACA 2401 AGCTCCACCG TGACTTTCGG GCGAAGGGCT ATCGGAAGGA GGACTTCCTG GGCCCATACC 2461 CAACTTTCTT GTACAAAGTt ggcattataa gaaagcattg cttatcaatt tgttgcaacg 2521 aac