Construct: ORF ccsbBroadEn_07788

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001113.1_s300c1, BRDN0000394225
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
MAN1B1 (11253)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 11253 MAN1B1 mannosidase alpha class 1B ... NM_016219.5 99.9% 100% 2046T>C
2 human 11253 MAN1B1 mannosidase alpha class 1B ... XM_024447403.1 92.6% 75.5% 1763_1845del;2129T>C;2181_2262del
3 human 11253 MAN1B1 mannosidase alpha class 1B ... XM_006716945.4 88.6% 87.1% (many diffs)
4 human 11253 MAN1B1 mannosidase alpha class 1B ... NR_045720.2 76.5% (many diffs)
5 human 11253 MAN1B1 mannosidase alpha class 1B ... XM_017014239.1 75.1% 72.2% (many diffs)
6 human 11253 MAN1B1 mannosidase alpha class 1B ... NR_045721.2 73.8% (many diffs)
7 human 11253 MAN1B1 mannosidase alpha class 1B ... XR_001746176.1 71.8% (many diffs)
8 mouse 227619 Man1b1 mannosidase, alpha, class 1... XM_011239058.2 47.9% 49.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2163
ORF length:
2097
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC TGCCTGCGAG GGCAGGAGAA GCGGAGCTCT CGGTTCCTCT CAGTCGGACT
121TCCTGACGCC GCCAGTGGGC GGGGCCCCTT GGGCCGTCGC CACCACTGTA GTCATGTACC
181CACCGCCGCC GCCGCCGCCT CATCGGGACT TCATCTCGGT GACGCTGAGC TTTGGCGAGA
241ACTATGACAA CAGCAAGAGT TGGCGGCGGC GCTCGTGCTG GAGGAAATGG AAGCAACTGT
301CGAGATTGCA GCGGAATATG ATTCTCTTCC TCCTTGCCTT TCTGCTTTTC TGTGGACTCC
361TCTTCTACAT CAACTTGGCT GACCATTGGA AAGCTCTGGC TTTCAGGCTA GAGGAAGAGC
421AGAAGATGAG GCCAGAAATT GCTGGGTTAA AACCAGCAAA TCCACCCGTC TTACCAGCTC
481CTCAGAAGGC GGACACCGAC CCTGAGAACT TACCTGAGAT TTCGTCACAG AAGACACAAA
541GACACATCCA GCGGGGACCA CCTCACCTGC AGATTAGACC CCCAAGCCAA GACCTGAAGG
601ATGGGACCCA GGAGGAGGCC ACAAAAAGGC AAGAAGCCCC TGTGGATCCC CGCCCGGAAG
661GAGATCCGCA GAGGACAGTC ATCAGCTGGA GGGGAGCGGT GATCGAGCCT GAGCAGGGCA
721CCGAGCTCCC TTCAAGAAGA GCAGAAGTGC CCACCAAGCC TCCCCTGCCA CCGGCCAGGA
781CACAGGGCAC ACCAGTGCAT CTGAACTATC GCCAGAAGGG CGTGATTGAC GTCTTCCTGC
841ATGCATGGAA AGGATACCGC AAGTTTGCAT GGGGCCATGA CGAGCTGAAG CCTGTGTCCA
901GGTCCTTCAG TGAGTGGTTT GGCCTCGGTC TCACACTGAT CGACGCGCTG GACACCATGT
961GGATCTTGGG TCTGAGGAAA GAATTTGAGG AAGCCAGGAA GTGGGTGTCG AAGAAGTTAC
1021ACTTTGAAAA GGACGTGGAC GTCAACCTGT TTGAGAGCAC GATCCGCATC CTGGGGGGGC
1081TCCTGAGTGC CTACCACCTG TCTGGGGACA GCCTCTTCCT GAGGAAAGCT GAGGATTTTG
1141GAAATCGGCT AATGCCTGCC TTCAGAACAC CATCCAAGAT TCCTTACTCG GATGTGAACA
1201TCGGTACTGG AGTTGCCCAC CCGCCACGGT GGACCTCCGA CAGCACTGTG GCCGAGGTGA
1261CCAGCATTCA GCTGGAGTTC CGGGAGCTCT CCCGTCTCAC AGGGGATAAG AAGTTTCAGG
1321AGGCAGTGGA GAAGGTGACA CAGCACATCC ACGGCCTGTC TGGGAAGAAG GATGGGCTGG
1381TGCCCATGTT CATCAATACC CACAGTGGCC TCTTCACCCA CCTGGGCGTA TTCACGCTGG
1441GCGCCAGGGC CGACAGCTAC TATGAGTACC TGCTGAAGCA GTGGATCCAG GGCGGGAAGC
1501AGGAGACACA GCTGCTGGAA GACTACGTGG AAGCCATCGA GGGTGTCAGA ACGCACCTGC
1561TGCGGCACTC CGAGCCCAGT AAGCTCACCT TTGTGGGGGA GCTTGCCCAC GGCCGCTTCA
1621GTGCCAAGAT GGACCACCTG GTGTGCTTCC TGCCAGGGAC GCTGGCTCTG GGCGTCTACC
1681ACGGCCTGCC CGCCAGCCAC ATGGAGCTGG CCCAGGAGCT CATGGAGACT TGTTACCAGA
1741TGAACCGGCA GATGGAGACG GGGCTGAGTC CCGAGATCGT GCACTTCAAC CTTTACCCCC
1801AGCCGGGCCG TCGGGACGTG GAGGTCAAGC CAGCAGACAG GCACAACCTG CTGCGGCCAG
1861AGACCGTGGA GAGCCTGTTC TACCTGTACC GCGTCACAGG GGACCGCAAA TACCAGGACT
1921GGGGCTGGGA GATTCTGCAG AGCTTCAGCC GATTCACACG GGTCCCCTCG GGTGGCTATT
1981CTTCCATCAA CAATGTCCAG GATCCTCAGA AGCCCGAGCC TAGGGACAAG ATGGAGAGCT
2041TCTTCCTGGG GGAGACGCTC AAGTATCTGT TCTTGCTCTT CTCCGATGAC CCAAACCTGC
2101TCAGCCTGGA CGCCTACGTG TTCAACACCG AAGCCCACCC TCTGCCTATC TGGACCCCTG
2161CCTACCCAAC TTTCTTGTAC AAAGTtggca ttataagaaa gcattgctta tcaatttgtt
2221gcaacgaac

Download FASTA (ORF) (Full)

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