Construct: ORF ccsbBroadEn_07795
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF012989.1_s300c1, BRDN0000456736
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SLCO2B1 (11309)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 11309 | SLCO2B1 | solute carrier organic anio... | NM_007256.5 | 99.9% | 100% | 1221C>A |
| 2 | human | 11309 | SLCO2B1 | solute carrier organic anio... | XM_017017157.1 | 99.1% | 99.1% | (many diffs) |
| 3 | human | 11309 | SLCO2B1 | solute carrier organic anio... | NM_001145211.3 | 96.8% | 96.8% | 0_1ins66;1155C>A |
| 4 | human | 11309 | SLCO2B1 | solute carrier organic anio... | NM_001145212.3 | 79.2% | 78.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2193
- ORF length:
- 2127
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGG ACCCAGGATA GGGCCAGCGG GTGAGGTACC CCAGGTACCA GACAAGGAAA 121 CCAAAGCCAC AATGGGCACA GAAAACACAC CTGGAGGCAA AGCCAGCCCA GACCCTCAGG 181 ACGTGCGGCC AAGTGTGTTC CATAACATCA AGCTGTTCGT TCTGTGCCAC AGCCTGCTGC 241 AGCTGGCGCA GCTCATGATC TCCGGCTACC TAAAGAGCTC CATCTCCACA GTGGAGAAGC 301 GCTTCGGCCT CTCCAGCCAG ACGTCGGGGC TGCTGGCCTC CTTCAACGAG GTGGGGAACA 361 CAGCCTTGAT TGTGTTTGTG AGCTATTTTG GCAGCCGGGT GCACCGACCC CGAATGATTG 421 GCTATGGGGC TATCCTTGTG GCCCTGGCGG GCCTGCTCAT GACTCTCCCG CACTTCATCT 481 CGGAGCCATA CCGCTACGAC AACACCAGCC CTGAGGATAT GCCACAGGAC TTCAAGGCTT 541 CCCTGTGCCT GCCCACAACC TCGGCCCCAG CCTCGGCCCC CTCCAATGGC AACTGCTCAA 601 GCTACACAGA AACCCAGCAT CTGAGTGTGG TGGGGATCAT GTTCGTGGCA CAGACCCTGC 661 TGGGCGTGGG CGGGGTGCCC ATTCAGCCCT TTGGCATCTC CTACATCGAT GACTTTGCCC 721 ACAACAGCAA CTCGCCCCTC TACCTCGGGA TCCTGTTTGC AGTGACCATG ATGGGGCCAG 781 GCCTGGCCTT TGGGCTGGGC AGCCTCATGC TGCGCCTTTA TGTGGACATT AACCAGATGC 841 CAGAAGGTGG TATCAGCCTG ACCATAAAGG ACCCCCGATG GGTGGGTGCC TGGTGGCTGG 901 GTTTCCTCAT CGCTGCCGGT GCAGTGGCCC TGGCTGCCAT CCCCTACTTC TTCTTCCCCA 961 AGGAAATGCC CAAGGAAAAA CGTGAGCTTC AGTTTCGGCG AAAGGTCTTA GCAGTCACAG 1021 ACTCACCTGC CAGGAAGGGC AAGGACTCTC CCTCTAAGCA GAGCCCTGGG GAGTCCACGA 1081 AGAAGCAGGA TGGCCTAGTC CAGATTGCAC CAAACCTGAC TGTGATCCAG TTCATTAAAG 1141 TCTTCCCCAG GGTGCTGCTG CAGACCCTAC GCCACCCCAT CTTCCTGCTG GTGGTCCTGT 1201 CCCAGGTATG CTTGTCATCC ATGGCTGCGG GCATGGCCAC CTTCCTGCCC AAGTTCCTGG 1261 AGCGCCAGTT TTCCATCACA GCCTCATACG CCAACCTGCT CATCGGCTGC CTCTCCTTCC 1321 CTTCGGTCAT CGTGGGCATC GTGGTGGGTG GCGTCCTGGT CAAGCGGCTC CACCTGGGCC 1381 CTGTGGGATG CGGTGCCCTT TGCCTGCTGG GGATGCTGCT GTGCCTCTTC TTCAGCCTGC 1441 CGCTCTTCTT TATCGGCTGC TCCAGCCACC AGATTGCGGG CATCACACAC CAGACCAGTG 1501 CCCACCCTGG GCTGGAGCTG TCTCCAAGCT GCATGGAGGC CTGCTCCTGC CCATTGGACG 1561 GCTTTAACCC TGTCTGCGAC CCCAGCACTC GTGTGGAATA CATCACACCC TGCCACGCAG 1621 GCTGCTCAAG CTGGGTGGTC CAGGATGCTC TGGACAACAG CCAGGTTTTC TACACCAACT 1681 GCAGCTGCGT GGTGGAGGGC AACCCCGTGC TGGCAGGATC CTGCGACTCA ACGTGCAGCC 1741 ATCTGGTGGT GCCCTTCCTG CTCCTGGTCA GCCTGGGCTC GGCCCTGGCC TGTCTCACCC 1801 ACACACCCTC CTTCATGCTC ATCCTAAGAG GAGTGAAGAA AGAAGACAAG ACTTTGGCTG 1861 TGGGCATCCA GTTCATGTTC CTGAGGATTT TGGCCTGGAT GCCCAGCCCC GTGATCCACG 1921 GCAGCGCCAT CGACACCACC TGTGTGCACT GGGCCCTGAG CTGTGGGCGT CGAGCTGTCT 1981 GTCGCTACTA CAATAATGAC CTGCTCCGAA ACCGGTTCAT CGGCCTCCAG TTCTTCTTCA 2041 AAACAGGTTC TGTGATCTGC TTCGCCTTAG TTTTGGCTGT CCTGAGGCAG CAGGACAAAG 2101 AGGCAAGGAC CAAAGAGAGC AGATCCAGCC CTGCCGTAGA GCAGCAATTG CTAGTGTCGG 2161 GGCCAGGGAA GAAGCCAGAG GATTCCCGAG TGTGCCCAAC TTTCTTGTAC AAAGTTGGca 2221 ttataagaaa gcattgctta tcaatttgtt gcaacgaac