Construct: ORF ccsbBroadEn_07811
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009240.1_s300c1, BRDN0000385485
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- MORC2 (22880)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 22880 | MORC2 | MORC family CW-type zinc fi... | NM_014941.3 | 100% | 100% | |
| 2 | human | 22880 | MORC2 | MORC family CW-type zinc fi... | NM_001303256.3 | 93.9% | 93.9% | 1_186del |
| 3 | human | 22880 | MORC2 | MORC family CW-type zinc fi... | NM_001303257.2 | 93.7% | 93.7% | 1_186del;3019_3020insAGGTGCAGG |
| 4 | human | 22880 | MORC2 | MORC family CW-type zinc fi... | XM_011530004.2 | 93.5% | 93.5% | 1_201del |
| 5 | human | 22880 | MORC2 | MORC family CW-type zinc fi... | XM_017028667.2 | 93.2% | 93.2% | 1_201del;3034_3035insAGGTGCAGG |
| 6 | mouse | 74522 | Morc2a | microrchidia 2A | NM_198162.1 | 86.5% | 90.2% | (many diffs) |
| 7 | mouse | 74522 | Morc2a | microrchidia 2A | NM_001159288.1 | 81.4% | 84.8% | (many diffs) |
| 8 | mouse | 74522 | Morc2a | microrchidia 2A | XM_011243776.2 | 81.4% | 84.8% | (many diffs) |
| 9 | mouse | 74522 | Morc2a | microrchidia 2A | XM_006514871.3 | 81.3% | 84.8% | (many diffs) |
| 10 | mouse | 74522 | Morc2a | microrchidia 2A | XM_011243775.2 | 81.3% | 84.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2976
- ORF length:
- 2910
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCT TTGCTTTTTG GATGATGGAG CAGGAATGGA TCCAAGTGAT GCTGCCAGTG 121 TGATCCAGTT TGGGAAGTCG GCCAAGCGAA CACCTGAGTC TACTCAGATT GGGCAGTACG 181 GGAATGGGTT AAAATCGGGC TCAATGCGCA TTGGGAAGGA TTTTATCCTG TTCACCAAGA 241 AGGAAGACAC CATGACCTGC CTCTTCCTGT CTCGCACGTT TCATGAGGAA GAAGGCATTG 301 ATGAAGTGAT AGTCCCACTG CCCACCTGGA ATGCTCGGAC CCGGGAACCT GTCACAGACA 361 ATGTAGAGAA ATTTGCCATT GAGACAGAAC TCATCTATAA GTACTCTCCA TTCCGCACTG 421 AGGAGGAAGT GATGACCCAG TTTATGAAGA TTCCTGGGGA CAGCGGAACA TTGGTGATCA 481 TCTTCAATCT CAAACTCATG GATAATGGAG AGCCAGAACT AGACATAATC TCAAATCCAA 541 GAGATATCCA GATGGCAGAG ACGTCCCCAG AGGGCACGAA GCCAGAGCGG CGCTCGTTCC 601 GTGCCTATGC CGCTGTGCTC TATATTGATC CCCGGATGAG GATCTTCATC CATGGGCACA 661 AGGTGCAGAC CAAGAGGCTC TCCTGCTGCC TGTACAAGCC CAGGATGTAC AAGTACACGT 721 CAAGCCGTTT CAAGACCCGT GCGGAGCAGG AGGTGAAGAA AGCAGAGCAC GTAGCAAGGA 781 TTGCTGAAGA GAAGGCGCGG GAGGCAGAGA GCAAAGCTCG GACATTAGAA GTACGCCTAG 841 GTGGAGACCT CACGCGGGAC TCCAGGGTGA TGTTGCGACA GGTCCAGAAC AGAGCCATCA 901 CTCTGCGCAG AGAAGCCGAT GTCAAGAAGA GGATCAAGGA GGCCAAGCAG CGAGCACTTA 961 AAGAACCTAA GGAACTGAAT TTTGTTTTTG GTGTCAACAT TGAACACCGG GATCTGGATG 1021 GCATGTTCAT CTACAACTGT AGCCGACTGA TCAAAATGTA TGAGAAAGTG GGCCCACAGC 1081 TGGAAGGGGG CATGGCATGT GGCGGGGTTG TTGGGGTTGT TGATGTGCCC TACCTGGTCC 1141 TGGAGCCTAC ACACAACAAA CAGGACTTTG CTGATGCCAA GGAGTACCGG CACCTGCTCC 1201 GAGCAATGGG GGAGCACCTG GCGCAGTATT GGAAGGATAT TGCCATCGCC CAGAGGGGAA 1261 TCATCAAGTT CTGGGATGAG TTTGGCTACC TCTCTGCCAA CTGGAACCAG CCCCCATCCA 1321 GTGAGCTGCG TTACAAACGC CGGAGAGCTA TGGAAATCCC CACCACCATC CAGTGCGATT 1381 TGTGTCTGAA ATGGAGAACC CTCCCCTTCC AGCTGAGTTC TGTGGAAAAA GATTACCCTG 1441 ACACCTGGGT TTGCTCCATG AACCCTGATC CTGAACAGGA CCGGTGTGAG GCTTCTGAAC 1501 AAAAGCAGAA GGTTCCCCTG GGAACATTCA GAAAGGACAT GAAGACGCAG GAAGAGAAGC 1561 AGAAACAACT GACAGAGAAA ATTCGCCAGC AGCAGGAGAA GCTGGAGGCC CTTCAGAAAA 1621 CCACACCCAT CCGCTCCCAA GCAGACCTGA AGAAATTGCC CTTGGAAGTG ACCACCAGAC 1681 CTTCCACTGA GGAACCTGTG CGTAGACCTC AGCGTCCTCG GTCGCCCCCT TTACCTGCTG 1741 TGATCAGGAA CGCCCCCAGC AGACCCCCTT CTTTGCCAAC TCCTAGACCA GCCAGCCAGC 1801 CCCGAAAGGC TCCTGTCATC AGCAGTACCC CAAAGCTCCC TGCTTTGGCA GCCCGGGAGG 1861 AGGCCAGCAC ATCTAGGCTG CTCCAGCCAC CTGAGGCACC CCGAAAGCCT GCCAACACTC 1921 TCGTCAAGAC TGCATCCCGA CCTGCCCCTC TGGTGCAGCA ACTGTCACCA TCTTTACTGC 1981 CCAACTCCAA GAGCCCTCGG GAGGTTCCTT CTCCCAAAGT CATCAAGACT CCAGTGGTGA 2041 AGAAGACAGA GTCACCCATC AAACTCTCCC CGGCTACCCC TAGTCGGAAG CGGAGTGTCG 2101 CAGTTTCTGA TGAGGAAGAA GTTGAGGAGG AAGCTGAGAG GAGGAAGGAG AGGTGCAAGC 2161 GGGGCAGATT TGTTGTGAAG GAGGAAAAGA AGGACTCGAA TGAGCTCTCA GACAGTGCTG 2221 GGGAAGAGGA CTCGGCTGAC CTCAAGAGAG CTCAGAAAGA TAAAGGGCTG CACGTGGAGG 2281 TGCGTGTGAA CAGGGAGTGG TACACGGGCC GTGTCACAGC CGTGGAGGTG GGCAAGCATG 2341 TGGTGCGGTG GAAGGTGAAG TTTGACTACG TGCCCACAGA CACGACACCA AGAGACCGCT 2401 GGGTGGAGAA AGGCAGTGAG GATGTGCGGC TGATGAAACC CCCTTCTCCG GAACATCAGA 2461 GCCTTGATAC ACAACAGGAG GGCGGGGAGG AGGAGGTGGG CCCTGTGGCC CAGCAGGCCA 2521 TAGCTGTCGC AGAGCCCTCC ACTTCCGAAT GCCTCCGCAT TGAGCCTGAC ACCACTGCCC 2581 TGAGCACCAA TCACGAGACC ATCGACCTGC TTGTCCAGAT CCTCCGGAAT TGTTTACGGT 2641 ACTTCCTGCC TCCAAGTTTC CCCATCTCCA AGAAGCAGCT GAGTGCTATG AATTCAGATG 2701 AGCTAATATC TTTTCCTCTG AAGGAGTACT TCAAGCAATA TGAAGTAGGG CTCCAAAACC 2761 TGTGCAATTC CTACCAGAGC CGTGCTGACT CCCGGGCCAA GGCCTCCGAG GAAAGCCTGC 2821 GCACCTCCGA GAGGAAGCTC CGCGAGACGG AGGAGAAGCT GCAGAAGCTG AGGACCAACA 2881 TCGTGGCACT CCTGCAAAAG GTGCAGGAGG ACATAGACAT CAACACAGAT GATGAGCTGG 2941 ACGCCTACAT TGAGGACCTC ATCACCAAGG GGGACTGCCC AACTTTCTTG TACAAAGTtg 3001 gcattataag aaagcattgc ttatcaattt gttgcaacga ac