Construct: ORF ccsbBroadEn_07820
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF000934.1_s300c1, BRDN0000398225
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SNW1 (22938)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 22938 | SNW1 | SNW domain containing 1 | NM_012245.3 | 99.8% | 100% | 999G>A;1476G>T |
| 2 | human | 22938 | SNW1 | SNW domain containing 1 | NM_001318844.2 | 93.7% | 83.6% | (many diffs) |
| 3 | human | 22938 | SNW1 | SNW domain containing 1 | XM_005267413.4 | 80.1% | 64.9% | 999G>A;1031_1032ins97;1290_1291ins221 |
| 4 | mouse | 66354 | Snw1 | SNW domain containing 1 | NM_025507.2 | 92.2% | 99.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1677
- ORF length:
- 1608
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGCGCTCACC AGCTTTTTAC CTGCACCTAC TCAGCTATCT CAGGACCAGC 121 TTGAGGCTGA AGAAAAGGCA AGATCCCAGA GATCACGGCA GACCTCACTG GTCTCCTCCC 181 GAAGAGAACC TCCCCCGTAC GGATACCGGA AAGGCTGGAT ACCTCGGTTA TTAGAGGATT 241 TTGGAGATGG AGGTGCTTTT CCAGAGATCC ATGTGGCCCA GTATCCACTG GATATGGGAC 301 GAAAGAAAAA AATGTCGAAT GCGCTGGCCA TTCAGGTGGA TTCTGAAGGA AAAATTAAAT 361 ATGATGCAAT TGCTCGACAA GGACAGTCAA AAGACAAGGT CATTTATAGC AAATACACTG 421 ACCTGGTTCC AAAGGAGGTT ATGAATGCAG ATGATCCAGA CCTGCAAAGG CCCGATGAAG 481 AAGCTATTAA AGAGATAACA GAAAAGACAA GAGTAGCCTT AGAAAAATCT GTATCACAGA 541 AGGTCGCCGC AGCCATGCCA GTTCGAGCAG CTGACAAATT GGCTCCTGCT CAGTATATCC 601 GATACACACC ATCTCAGCAA GGAGTGGCAT TCAACTCTGG AGCTAAACAG AGGGTTATTC 661 GGATGGTAGA AATGCAGAAA GATCCAATGG AGCCTCCAAG GTTCAAGATT AATAAGAAAA 721 TTCCCCGGGG ACCACCTTCT CCTCCTGCGC CTGTCATGCA TTCTCCTAGC CGAAAGATGA 781 CTGTAAAGGA ACAACAAGAG TGGAAGATTC CTCCTTGTAT TTCTAACTGG AAAAATGCAA 841 AGGGTTATAC AATTCCATTA GACAAACGTC TGGCTGCTGA TGGAAGAGGA CTACAGACAG 901 TACACATAAA TGAAAATTTC GCCAAATTGG CAGAAGCCCT CTACATTGCT GATCGGAAGG 961 CTCGTGAAGC TGTGGAAATG CGTGCCCAAG TAGAGAGAAA AATGGCTCAG AAAGAAAAGG 1021 AAAAACATGA AGAGAAACTT AGAGAAATGG CCCAGAAAGC CAGGGAAAGA AGAGCTGGGA 1081 TCAAAACTCA TGTGGAAAAA GAGGATGGGG AGGCACGTGA GAGGGATGAA ATCCGGCATG 1141 ACAGGCGAAA AGAGAGACAG CATGACCGGA ATCTTTCCAG GGCAGCTCCT GATAAGAGGT 1201 CGAAACTTCA GAGAAATGAA AATCGGGATA TCAGTGAAGT TATTGCTCTC GGTGTTCCTA 1261 ATCCTCGGAC TTCCAATGAA GTTCAGTATG ACCAAAGGCT CTTCAACCAA TCCAAGGGTA 1321 TGGACAGTGG ATTTGCAGGT GGAGAAGATG AAATTTATAA TGTTTATGAT CAAGCCTGGA 1381 GAGGTGGTAA AGATATGGCC CAGAGTATTT ATAGGCCCAG TAAAAATCTG GACAAGGACA 1441 TGTATGGTGA TGACCTAGAA GCCAGAATAA AGACCAACAG ATTTGTTCCC GACAAGGAGT 1501 TTTCTGGTTC AGACCGTAGA CAGAGAGGCC GAGAAGGACC AGTTCAGTTT GAGGAAGATC 1561 CTTTTGGTTT GGACAAGTTT TTGGAAGAAG CCAAACAGCA TGGTGGCTCT AAAAGACCCT 1621 CAGATAGCAG CCGCCCCAAG GAACACGAGC ATGAAGGCAA GAAGAGGAGG AAGGAATTGC 1681 CAACTTTCTT GTACAAAGTt ggcattataa gaaagcattg cttatcaatt tgttgcaacg 1741 aac