Construct: ORF ccsbBroadEn_07832
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF000748.1_s300c1, BRDN0000393304
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- XPO7 (23039)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 23039 | XPO7 | exportin 7 | NM_015024.5 | 99.9% | 99.8% | 1194G>C;2504G>A |
| 2 | human | 23039 | XPO7 | exportin 7 | NM_001100161.2 | 99.1% | 98.9% | 491_517del;1221G>C;2531G>A |
| 3 | human | 23039 | XPO7 | exportin 7 | NM_001362802.2 | 97.9% | 97.7% | 426_427ins66;1128G>C;2438G>A |
| 4 | human | 23039 | XPO7 | exportin 7 | NR_156173.2 | 65.4% | (many diffs) | |
| 5 | mouse | 65246 | Xpo7 | exportin 7 | NM_023045.2 | 91.7% | 99.2% | (many diffs) |
| 6 | mouse | 65246 | Xpo7 | exportin 7 | XM_006519361.3 | 91.4% | 98.8% | (many diffs) |
| 7 | mouse | 65246 | Xpo7 | exportin 7 | XM_006519359.3 | 90.7% | 97.9% | (many diffs) |
| 8 | mouse | 65246 | Xpo7 | exportin 7 | XM_011245132.2 | 86.6% | 93.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 3327
- ORF length:
- 3261
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC GGATCATGTG CAGAGCCTGG CCCAACTAGA GAATCTGTGC AAACAGCTGT 121 ATGAAACCAC AGACACAACC ACTCGACTCC AGGCAGAGAA AGCCTTGGTT GAATTTACCA 181 ACAGCCCTGA TTGCCTGAGC AAGTGCCAGC TACTCCTCGA AAGAGGAAGT TCCTCTTACT 241 CCCAGTTACT GGCAGCTACA TGCCTTACCA AGCTTGTATC ACGCACAAAC AACCCCCTAC 301 CATTGGAACA GCGAATAGAT ATTCGGAACT ATGTGCTCAA CTACCTTGCC ACTCGGCCGA 361 AGTTGGCTAC TTTCGTGACA CAAGCACTTA TTCAGTTATA TGCCAGAATC ACAAAACTGG 421 GCTGGTTTGA CTGTCAGAAG GATGACTATG TCTTCAGAAA TGCAATCACA GACGTCACAA 481 GGTTTTTACA GGATAGTGTT GAATACTGCA TCATTGGTGT CACAATTTTA TCTCAGCTAA 541 CCAATGAAAT TAATCAAGCA GACACCACCC ATCCTTTAAC CAAGCACAGA AAAATAGCCT 601 CTTCTTTTCG CGATTCATCA TTATTTGATA TCTTCACACT TTCCTGCAAT TTACTAAAAC 661 AGGCTTCAGG AAAGAATCTA AACTTGAATG ATGAAAGTCA GCATGGCTTG CTCATGCAAC 721 TGCTCAAGCT CACTCATAAC TGCCTCAACT TTGACTTCAT CGGCACTTCC ACTGATGAGT 781 CCTCAGACGA CCTGTGTACA GTGCAGATTC CCACCAGCTG GAGATCAGCC TTCTTAGATT 841 CTTCAACCTT GCAGCTGTTT TTTGACCTGT ATCATTCCAT CCCTCCTTCA TTTTCACCTC 901 TGGTATTATC CTGCTTGGTA CAGATCGCTT CAGTCAGAAG ATCCCTGTTT AACAATGCAG 961 AGAGGGCCAA GTTTCTCTCT CATCTTGTTG ATGGTGTTAA ACGAATACTG GAAAACCCAC 1021 AGAGTTTATC AGACCCAAAC AATTACCATG AGTTTTGCAG ACTACTGGCC CGATTGAAGA 1081 GTAACTATCA ACTGGGAGAA TTGGTAAAGG TGGAAAACTA CCCTGAGGTC ATCCGATTGA 1141 TAGCCAACTT CACAGTGACC AGCCTACAGC ACTGGGAATT TGCTCCAAAT AGTGTGCACT 1201 ATCTTCTGAG CCTGTGGCAG CGGCTGGCAG CCTCTGTGCC GTATGTCAAA GCCACAGACC 1261 CCCACATGCT GGAAACTTAC ACTCCTGAGG TCACCAAAGC CTACATCACA TCCCGGTTGG 1321 AATCTGTGCA CATCATACTG AGAGATGGCC TGGAAGATCC CCTGGAGGAT ACGGGGCTGG 1381 TCCAGCAGCA GTTGGACCAG CTGTCCACCA TTGGGCGTTG TGAATATGAG AAGACGTGTG 1441 CACTCCTCGT GCAGTTGTTT GACCAGTCGG CCCAGTCGTA CCAGGAGCTG CTACAGAGCG 1501 CCAGCGCAAG CCCAATGGAC ATTGCAGTGC AGGAGGGAAG GCTGACATGG CTGGTTTACA 1561 TTATTGGAGC AGTGATCGGT GGCCGGGTTT CTTTTGCCAG CACTGATGAG CAAGACGCCA 1621 TGGATGGTGA GCTTGTCTGT CGGGTGCTCC AGCTGATGAA CCTAACAGAT TCTCGTTTGG 1681 CCCAGGCGGG TAATGAGAAG CTAGAGTTGG CCATGCTGAG CTTTTTTGAA CAGTTTCGTA 1741 AGATCTACAT TGGGGACCAA GTGCAGAAAT CCTCTAAGCT GTACCGCCGA CTCTCAGAAG 1801 TTCTGGGCTT GAATGATGAG ACCATGGTCC TAAGCGTCTT CATAGGAAAA ATCATCACCA 1861 ACTTGAAGTA CTGGGGCCGT TGTGAACCAA TCACCTCCAA GACACTACAG CTTCTCAATG 1921 ACCTGTCCAT TGGGTACAGT AGCGTAAGGA AGCTAGTGAA GCTTAGTGCG GTACAGTTCA 1981 TGCTGAACAA TCACACGAGC GAGCACTTTT CATTTTTGGG TATTAACAAT CAGTCCAACC 2041 TGACAGACAT GCGGTGTCGG ACTACCTTCT ACACAGCACT TGGGCGTCTC CTCATGGTGG 2101 ATTTAGGAGA GGATGAAGAT CAGTATGAGC AGTTCATGCT GCCACTCACA GCAGCATTTG 2161 AGGCTGTGGC CCAGATGTTT AGCACCAATA GTTTCAACGA GCAGGAGGCA AAGCGAACTC 2221 TAGTTGGCCT AGTAAGAGAC CTGAGAGGGA TCGCTTTCGC TTTCAATGCC AAGACCAGCT 2281 TCATGATGCT CTTTGAATGG ATATATCCAT CCTATATGCC AATTCTCCAA CGGGCAATTG 2341 AGCTCTGGTA CCATGATCCA GCCTGTACTA CACCTGTACT CAAGTTGATG GCTGAATTGG 2401 TTCATAATAG GTCCCAGCGA CTCCAGTTTG ATGTCTCTTC CCCCAATGGC ATCTTACTCT 2461 TCCGAGAAAC CAGCAAGATG ATAACAATGT ATGGCAATCG CATCCTGACA CTAGGAGAGG 2521 TCCCAAAGGA TCAGGTCTAT GCTCTGAAGC TCAAGGGCAT CTCCATCTAC TTCTCCATGC 2581 TGAAGGCTGC TCTCAGTGGG AGTTACGTCA ATTTCGGAGT CTTTCGTCTC TATGGAGACG 2641 ATGCCCTGGA CAATGCTCTG CAGACCTTCA TCAAGCTGCT CCTCTCTATT CCTCACAGTG 2701 ATCTCTTGGA TTACCCCAAG CTCAGCCAGT CTTATTATTC ACTACTGGAA GTCCTGACCC 2761 AGGACCATAT GAACTTTATT GCAAGCCTGG AACCTCACGT CATCATGTAT ATTCTCTCTT 2821 CCATTTCTGA AGGACTTACT GCACTTGACA CCATGGTATG CACAGGCTGC TGCTCCTGCC 2881 TGGACCACAT TGTGACATAC CTCTTCAAGC AGCTGTCACG TAGCACCAAG AAGAGGACCA 2941 CACCCCTGAA CCAGGAGAGC GACCGCTTTC TGCACATCAT GCAGCAGCAT CCAGAGATGA 3001 TCCAGCAGAT GCTGTCCACG GTGCTGAACA TCATCATCTT TGAAGACTGT AGGAACCAGT 3061 GGTCTATGTC CCGACCACTA CTTGGCTTGA TATTGCTTAA TGAAAAGTAT TTTTCTGACC 3121 TAAGAAACAG TATTGTGAAC AGCCAGCCAC CGGAGAAGCA GCAGGCCATG CACCTGTGTT 3181 TTGAGAACCT GATGGAAGGC ATCGAGCGAA ATCTTCTTAC GAAAAACAGA GACAGGTTCA 3241 CCCAGAACCT GTCAGCATTC CGTCGAGAAG TCAACGACTC AATGAAGAAT TCCACTTATG 3301 GCGTGAATAG CAATGACATG ATGAGCTGCC CAACTTTCTT GTACAAAGTt ggcattataa 3361 gaaagcattg cttatcaatt tgttgcaacg aac