Construct: ORF ccsbBroadEn_07844
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF005186.1_s300c1, BRDN0000396790
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CLCC1 (23155)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 23155 | CLCC1 | chloride channel CLIC like 1 | NM_015127.4 | 99.9% | 100% | 453T>C |
| 2 | human | 23155 | CLCC1 | chloride channel CLIC like 1 | NM_001048210.2 | 90.8% | 90.9% | 340_489del;603T>C |
| 3 | human | 23155 | CLCC1 | chloride channel CLIC like 1 | NM_001278202.1 | 85.8% | 85.8% | 339_340ins213 |
| 4 | human | 23155 | CLCC1 | chloride channel CLIC like 1 | NM_001278203.1 | 73% | 73% | 339_340ins405 |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1569
- ORF length:
- 1503
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCT GTGTTCTTTG CTCCTTTGTG AATGTCTGTT GCTGGTAGCT GGTTATGCTC 121 ATGATGATGA CTGGATTGAC CCCACAGACA TGCTTAACTA TGATGCTGCT TCAGGAACAA 181 TGAGAAAATC TCAGGCAAAA TATGGTATTT CAGGGGAAAA GGATGTCAGT CCTGACTTGT 241 CATGTGCTGA TGAAATATCA GAATGTTATC ACAAACTTGA TTCTTTAACT TATAAGATTG 301 ATGAGTGTGA AAAGAAAAAG AGGGAAGACT ATGAAAGTCA AAGCAATCCT GTTTTTAGGA 361 GATACTTAAA TAAGATTTTA ATTGAAGCTG GAAAGCTTGG ACTTTTTCAT GATTTTGAAA 421 CATGGAAGTG GCGATTCGAA GATTCCTTTG GAGTGGATCC ATATAATGTG TTAATGGTAC 481 TTCTTTGTCT GCTCTGCATC GTGGTTTTAG TGGCTACCGA GCTGTGGACA TATGTACGTT 541 GGTACACTCA GTTGAGACGT GTTTTAATCA TCAGCTTTCT GTTCAGTTTG GGATGGAATT 601 GGATGTATTT ATATAAGCTA GCTTTTGCAC AGCATCAGGC TGAAGTCGCC AAGATGGAGC 661 CATTAAACAA TGTGTGTGCC AAAAAGATGG ACTGGACTGG AAGTATCTGG GAATGGTTTA 721 GAAGTTCATG GACCTATAAG GATGACCCAT GCCAAAAATA CTATGAGCTC TTACTAGTCA 781 ACCCTATTTG GTTGGTCCCA CCAACAAAGG CACTTGCAGT TACATTCACC ACATTTGTAA 841 CGGAGCCATT GAAGCATATT GGAAAAGGAA CTGGGGAATT TATTAAAGCA CTCATGAAGG 901 AAATTCCAGC GCTGCTTCAT CTTCCAGTGC TGATAATTAT GGCATTAGCC ATCCTGAGTT 961 TCTGCTATGG TGCTGGAAAA TCAGTTCATG TGCTGAGACA TATAGGCGGT CCTGAGAGCG 1021 AACCTCCCCA GGCACTTCGG CCACGGGATA GAAGACGGCA GGAGGAAATT GATTATAGAC 1081 CTGATGGTGG AGCAGGTGAT GCCGATTTCC ATTATAGGGG CCAAATGGGC CCCACTGAGC 1141 AAGGCCCTTA TGCCAAAACG TATGAGGGTA GAAGAGAGAT TTTGAGAGAG AGAGATGTTG 1201 ACTTGAGATT TCAGACTGGC AACAAGAGCC CTGAAGTGCT CCGGGCATTT GATGTACCAG 1261 ACGCAGAGGC ACGAGAGCAT CCCACGGTGG TACCCAGTCA TAAATCACCT GTTTTGGATA 1321 CAAAGCCCAA GGAGACAGGT GGAATCCTGG GGGAAGGCAC ACCGAAAGAA AGCAGTACTG 1381 AAAGCAGCCA GTCGGCCAAG CCTGTCTCTG GCCAAGACAC ATCAGGGAAT ACAGAAGGTT 1441 CACCCGCAGC GGAAAAGGCC CAGCTCAAGT CTGAAGCCGC AGGCAGCCCA GACCAAGGCA 1501 GCACATACAG CCCCGCAAGA GGTGTGGCTG GACCACGTGG ACAGGATCCG GTCAGCAGCC 1561 CCTGTGGCTA CCCAACTTTC TTGTACAAAG Ttggcattat aagaaagcat tgcttatcaa 1621 tttgttgcaa cgaac