Construct: ORF ccsbBroadEn_07860
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF005603.1_s300c1, BRDN0000389014
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ARC (23237)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 23237 | ARC | activity regulated cytoskel... | NM_015193.5 | 99.9% | 100% | 858C>G |
| 2 | mouse | 11838 | Arc | activity regulated cytoskel... | NM_001276684.1 | 85.9% | 92.9% | (many diffs) |
| 3 | mouse | 11838 | Arc | activity regulated cytoskel... | NM_018790.3 | 85.9% | 92.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1254
- ORF length:
- 1188
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA GCTGGACCAC CGGACCAGCG GCGGGCTCCA CGCCTACCCC GGGCCGCGGG 121 GCGGGCAGGT GGCCAAGCCC AACGTGATCC TGCAGATCGG GAAGTGCCGG GCCGAGATGC 181 TGGAGCACGT GCGGCGGACG CACCGGCACC TGCTGGCCGA GGTGTCCAAG CAGGTGGAGC 241 GCGAGCTGAA GGGGCTGCAC CGGTCGGTCG GGAAGCTGGA GAGCAACCTG GACGGCTACG 301 TGCCCACGAG CGACTCGCAG CGCTGGAAGA AGTCCATCAA GGCCTGCCTG TGCCGCTGCC 361 AGGAGACCAT CGCCAACCTG GAGCGCTGGG TCAAGCGCGA GATGCACGTG TGGCGCGAGG 421 TGTTCTACCG CCTGGAGCGC TGGGCCGACC GCCTGGAGTC CACGGGCGGC AAGTACCCGG 481 TGGGCAGCGA GTCAGCCCGC CACACCGTTT CCGTGGGCGT GGGGGGTCCC GAGAGCTACT 541 GCCACGAGGC AGACGGCTAC GACTACACCG TCAGCCCCTA CGCCATCACC CCGCCCCCAG 601 CCGCTGGCGA GCTGCCCGGG CAGGAGCCCG CCGAGGCCCA GCAGTACCAG CCGTGGGTCC 661 CCGGCGAGGA CGGGCAGCCC AGCCCCGGCG TGGACACGCA GATCTTCGAG GACCCTCGAG 721 AGTTCCTGAG CCACCTAGAG GAGTACTTGC GGCAGGTGGG CGGCTCTGAG GAGTACTGGC 781 TGTCCCAGAT CCAGAATCAC ATGAACGGGC CGGCCAAGAA GTGGTGGGAG TTCAAGCAGG 841 GCTCCGTGAA GAACTGGGTG GAGTTCAAGA AGGAGTTCCT GCAGTACAGC GAGGGCACGC 901 TGTCCCGAGA GGCCATCCAG CGGGAGCTGG ACCTGCCGCA GAAGCAGGGC GAGCCGCTGG 961 ACCAGTTCCT GTGGCGCAAG CGGGACCTGT ACCAGACGCT CTACGTGGAC GCGGACGAGG 1021 AGGAGATCAT CCAGTACGTG GTGGGCACCC TGCAGCCCAA GCTCAAGCGT TTCCTGCGCC 1081 ACCCCCTGCC CAAGACCCTG GAGCAGCTCA TCCAGAGGGG CATGGAGGTG CAGGATGACC 1141 TGGAGCAGGC GGCCGAGCCG GCCGGCCCCC ACCTCCCGGT GGAGGATGAG GCGGAGACCC 1201 TCACGCCCGC CCCCAACAGC GAGTCCGTGG CCAGTGACCG GACCCAGCCC GAGTACCCAA 1261 CTTTCTTGTA CAAAGTtggc attataagaa agcattgctt atcaatttgt tgcaacgaac