Construct: ORF ccsbBroadEn_07891
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF016989.1_s300c1, BRDN0000386111
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- HAAO (23498)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 23498 | HAAO | 3-hydroxyanthranilate 3,4-d... | NM_012205.3 | 99.8% | 100% | 516G>A |
| 2 | human | 23498 | HAAO | 3-hydroxyanthranilate 3,4-d... | XM_011532729.3 | 89.3% | 89.5% | 350_351ins90;426G>A |
| 3 | human | 23498 | HAAO | 3-hydroxyanthranilate 3,4-d... | XM_011532730.3 | 87.9% | 88.1% | 0_1ins102;414G>A |
| 4 | human | 23498 | HAAO | 3-hydroxyanthranilate 3,4-d... | XM_024452774.1 | 81.4% | 71.3% | (many diffs) |
| 5 | human | 23498 | HAAO | 3-hydroxyanthranilate 3,4-d... | XM_024452775.1 | 70.6% | 60.7% | (many diffs) |
| 6 | human | 23498 | HAAO | 3-hydroxyanthranilate 3,4-d... | XM_005264230.4 | 70.2% | 52.2% | 483_484ins146;603_604ins109 |
| 7 | human | 23498 | HAAO | 3-hydroxyanthranilate 3,4-d... | XM_011532731.3 | 59.7% | 42.7% | 350_351ins90;393_394ins146;513_514ins109 |
| 8 | human | 23498 | HAAO | 3-hydroxyanthranilate 3,4-d... | XM_017003717.2 | 58.3% | 41.4% | 0_1ins102;381_382ins146;501_502ins109 |
| 9 | mouse | 107766 | Haao | 3-hydroxyanthranilate 3,4-d... | NM_025325.2 | 85.2% | 85.3% | (many diffs) |
| 10 | mouse | 107766 | Haao | 3-hydroxyanthranilate 3,4-d... | XM_006523463.3 | 85.2% | 85.3% | (many diffs) |
| 11 | mouse | 107766 | Haao | 3-hydroxyanthranilate 3,4-d... | XM_006523465.3 | 75.2% | 75.8% | (many diffs) |
| 12 | mouse | 107766 | Haao | 3-hydroxyanthranilate 3,4-d... | XM_006523467.3 | 50% | 50% | (many diffs) |
| 13 | mouse | 107766 | Haao | 3-hydroxyanthranilate 3,4-d... | XR_385257.3 | 23.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 924
- ORF length:
- 858
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA GCGCCGCCTG GGAGTGAGGG CCTGGGTGAA GGAGAACCGG GGCTCCTTCC 121 AGCCCCCGGT CTGCAACAAG CTCATGCACC AGGAGCAGCT CAAAGTCATG TTCATCGGAG 181 GCCCCAACAC CAGGAAGGAC TATCACATCG AAGAGGGTGA AGAGGTATTT TACCAGCTGG 241 AGGGAGACAT GGTTCTCCGA GTCCTGGAGC AAGGGAAACA CCGGGATGTG GTCATTCGGC 301 AGGGAGAGAT ATTCCTCCTG CCTGCCAGGG TGCCCCACTC ACCACAGAGG TTTGCCAACA 361 CCGTGGGGCT GGTGGTTGAG CGAAGGCGGC TGGAGACCGA GCTAGATGGG CTCAGGTACT 421 ATGTGGGCGA CACCATGGAC GTTCTGTTTG AGAAGTGGTT CTACTGCAAG GACCTCGGCA 481 CGCAGTTGGC CCCCATCATC CAGGAGTTCT TCAGCTCTGA GCAGTACAGA ACAGGAAAGC 541 CCATCCCTGA CCAGCTGCTC AAGGAGCCAC CATTCCCTCT AAGCACACGA TCCATCATGG 601 AGCCCATGTC CCTGGATGCC TGGCTGGACA GCCACCACAG GGAGCTGCAG GCAGGCACAC 661 CACTCAGCCT GTTTGGGGAC ACCTATGAGA CCCAGGTGAT CGCCTATGGG CAAGGCAGCA 721 GCGAAGGCCT GAGACAGAAT GTGGACGTGT GGCTGTGGCA GCTGGAGGGC TCCTCGGTGG 781 TGACAATGGG GGGACGGCGC CTGAGCCTGG CCCCTGATGA CAGCCTCCTG GTGCTAGCTG 841 GGACCTCGTA TGCCTGGGAG CGAACACAAG GCTCTGTGGC CCTGTCTGTG ACCCAGGACC 901 CTGCCTGCAA GAAGCCCCTG GGGTGCCCAA CTTTCTTGTA CAAAGTtggc attataagaa 961 agcattgctt atcaatttgt tgcaacgaac