Transcript: Human XM_011532731.3

PREDICTED: Homo sapiens 3-hydroxyanthranilate 3,4-dioxygenase (HAAO), transcript variant X6, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
HAAO (23498)
Length:
9439
CDS:
8467..8982

Additional Resources:

NCBI RefSeq record:
XM_011532731.3
NBCI Gene record:
HAAO (23498)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011532731.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000056633 GAAGAGGGTGAAGAGGTATTT pLKO.1 8611 CDS 100% 13.200 9.240 N HAAO n/a
2 TRCN0000056636 CTGAGCAGTACAGAACAGGAA pLKO.1 8828 CDS 100% 2.640 1.848 N HAAO n/a
3 TRCN0000056635 CCCGGTCTGCAACAAGCTCAT pLKO.1 8526 CDS 100% 1.350 0.945 N HAAO n/a
4 TRCN0000056637 CGAGTCCTGGAGCAAGGGAAA pLKO.1 8659 CDS 100% 1.350 0.945 N HAAO n/a
5 TRCN0000257473 GCCAGTGAAAGGGTCTAATAT pLKO_005 2959 5UTR 100% 15.000 7.500 Y FTO n/a
6 TRCN0000074123 CGCCTGTAATCCCAACACTTT pLKO.1 416 5UTR 100% 4.950 2.475 Y GJD4 n/a
7 TRCN0000166650 CGCCTGTAATCCCAACACTTT pLKO.1 416 5UTR 100% 4.950 2.475 Y C9orf85 n/a
8 TRCN0000222574 CGCCTGTAATCCCAGCACTTT pLKO.1 2507 5UTR 100% 4.950 2.475 Y ERAP2 n/a
9 TRCN0000180418 GATCACTTGAGCTCAGGAGTT pLKO.1 590 5UTR 100% 4.050 2.025 Y ERN2 n/a
10 TRCN0000255402 CAACGTAACTTTGCTGAATTT pLKO_005 3514 5UTR 100% 13.200 6.600 Y FTO n/a
11 TRCN0000078113 GCCTGTAATCCCAGCACTTTA pLKO.1 2508 5UTR 100% 13.200 6.600 Y LIAS n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011532731.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_07891 pDONR223 100% 59.7% 42.7% None 350_351ins90;393_394ins146;513_514ins109 n/a
2 ccsbBroad304_07891 pLX_304 0% 59.7% 42.7% V5 350_351ins90;393_394ins146;513_514ins109 n/a
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