Construct: ORF ccsbBroadEn_07897

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014088.1_s300c1, BRDN0000397931
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ATP6V0A2 (23545)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 23545 ATP6V0A2 ATPase H+ transporting V0 s... NM_012463.4 99.8% 100% 426T>C;471T>C;1515T>C
2 human 23545 ATP6V0A2 ATPase H+ transporting V0 s... XM_024448910.1 95.2% 95.3% (many diffs)
3 human 23545 ATP6V0A2 ATPase H+ transporting V0 s... XM_024448911.1 79.8% 79.7% (many diffs)
4 human 23545 ATP6V0A2 ATPase H+ transporting V0 s... XM_024448912.1 67.8% 67.8% 0_1ins822;2_3delTGinsCT;693T>C
5 mouse 21871 Atp6v0a2 ATPase, H+ transporting, ly... NM_011596.5 84.2% 91.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2634
ORF length:
2568
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGG GTCCCTGTTC CGGAGCGAGA CCATGTGCCT GGCGCAGCTC TTCCTGCAGT
121CGGGCACGGC CTACGAGTGC CTCAGCGCCC TGGGCGAGAA AGGCCTGGTC CAGTTCCGAG
181ACCTCAACCA GAACGTAAGT TCTTTCCAAA GAAAATTTGT TGGTGAGGTG AAGAGGTGTG
241AAGAGCTAGA GCGAATATTG GTGTATTTGG TACAGGAAAT TAATAGAGCT GATATTCCCC
301TTCCTGAAGG AGAGGCCAGC CCTCCTGCGC CACCCCTGAA ACAGGTTCTA GAAATGCAGG
361AGCAGTTGCA GAAGCTCGAG GTTGAACTGA GAGAAGTCAC TAAGAACAAG GAGAAACTGA
421GGAAAAACTT GCTGGAACTG ATAGAGTACA CTCACATGCT GAGAGTGACA AAGACCTTTG
481TGAAACGCAA CGTTGAGTTT GAACCCACTT ATGAAGAATT CCCTTCCTTA GAGAGCGATT
541CTTTGTTGGA TTACAGCTGT ATGCAGAGGC TGGGAGCAAA ACTGGGATTT GTGTCTGGCC
601TAATTAACCA AGGAAAAGTG GAAGCATTTG AAAAAATGTT GTGGAGAGTC TGCAAAGGGT
661ACACCATCGT GTCCTATGCA GAACTGGATG AATCCCTTGA AGACCCTGAA ACAGGGGAAG
721TCATAAAATG GTATGTCTTT TTAATATCCT TTTGGGGAGA GCAGATTGGC CACAAGGTTA
781AGAAGATATG TGATTGCTAC CACTGCCACG TGTACCCCTA TCCAAACACA GCCGAGGAGC
841GGAGGGAGAT CCAGGAGGGG CTGAACACCC GCATCCAGGA TCTCTACACT GTACTGCACA
901AAACCGAGGA CTATTTGAGG CAAGTGCTAT GTAAAGCCGC CGAGTCTGTC TACAGCCGTG
961TGATCCAGGT GAAGAAAATG AAGGCCATCT ATCACATGCT GAACATGTGC AGCTTTGACG
1021TGACCAACAA GTGCCTCATT GCTGAGGTCT GGTGTCCCGA GGCGGATCTG CAGGACCTGC
1081GCCGGGCACT GGAGGAGGGC TCGAGAGAGA GTGGTGCTAC AATCCCCTCA TTCATGAATA
1141TAATCCCCAC AAAAGAAACA CCCCCCACTC GGATCCGCAC CAACAAATTC ACCGAGGGAT
1201TTCAGAACAT CGTGGATGCT TATGGAGTCG GAAGCTACAG AGAAGTCAAT CCAGCTCTCT
1261TTACCATCAT CACCTTCCCG TTTTTATTTG CTGTGATGTT TGGAGACTTC GGACATGGCT
1321TTGTGATGTT TTTATTTGCC CTCTTGTTGG TGTTAAATGA AAATCATCCC AGACTAAATC
1381AGTCACAAGA GATCATGAGG ATGTTTTTTA ATGGCCGGTA CATCCTCCTG CTGATGGGGC
1441TGTTCTCAGT GTACACTGGC CTCATCTACA ACGACTGCTT TTCAAAGTCA GTCAACCTGT
1501TCGGCTCTGG GTGGAACGTG TCGGCCATGT ACAGCTCCAG CCACCCACCC GCAGAGCATA
1561AGAAGATGGT GCTTTGGAAC GACAGCGTCG TTAGACACAA CAGCATTTTG CAGCTGGATC
1621CAAGCATTCC TGGAGTGTTC CGAGGCCCTT ATCCCCTTGG CATTGATCCT ATTTGGAACT
1681TGGCCACAAA TCGCCTCACT TTTCTAAACT CTTTCAAAAT GAAAATGTCC GTGATTTTAG
1741GAATCATTCA TATGACTTTT GGAGTCATTC TGGGAATATT TAACCACTTG CACTTCAGGA
1801AGAAGTTCAA CATTTACCTG GTTTCCATCC CGGAACTTCT CTTCATGCTC TGTATCTTTG
1861GATACCTTAT ATTTATGATT TTCTACAAGT GGCTGGTTTT TTCAGCAGAA ACCTCCAGAG
1921TTGCTCCCAG CATTCTGATT GAATTTATTA ACATGTTTTT ATTCCCAGCC AGTAAAACAA
1981GTGGCCTTTA CACAGGGCAG GAGTATGTCC AGAGAGTGCT GCTGGTTGTC ACAGCATTGT
2041CTGTCCCTGT CCTCTTCTTG GGAAAGCCAC TGTTTTTGTT GTGGCTTCAC AATGGGCGTA
2101GTTGCTTCGG GGTGAACCGG AGTGGCTACA CACTTATAAG GAAAGATAGT GAGGAAGAAG
2161TTTCATTGCT GGGAAGCCAA GATATAGAAG AGGGAAATCA CCAGGTGGAA GATGGATGTA
2221GAGAAATGGC GTGTGAAGAG TTTAATTTTG GAGAAATATT AATGACCCAA GTAATCCATT
2281CCATCGAGTA CTGTCTGGGA TGCATCTCCA ACACCGCCTC CTACCTGAGG CTCTGGGCGC
2341TTAGCCTGGC TCACGCACAG TTGTCTGATG TCCTGTGGGC CATGCTGATG CGCGTGGGCC
2401TCCGCGTTGA CACCACCTAT GGCGTCTTGC TACTGCTCCC GGTTATCGCG CTCTTTGCAG
2461TTTTGACCAT TTTCATCCTT CTGATCATGG AAGGGCTTTC TGCGTTTCTT CACGCCATAC
2521GCCTCCACTG GGTAGAATTT CAGAACAAAT TCTACGTTGG TGCAGGCACC AAATTTGTTC
2581CTTTCTCATT CAGTCTACTT TCATCAAAGT TCAATAACGA CGACAGTGTG GCATGCCCAA
2641CTTTCTTGTA CAAAGTtggc attataagaa agcattgctt atcaatttgt tgcaacgaac

Download FASTA (ORF) (Full)

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