Construct: ORF ccsbBroadEn_07960
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF000558.1_s300c1, BRDN0000457185
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- RNF19A (25897)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 25897 | RNF19A | ring finger protein 19A, RB... | NM_001280539.2 | 99.9% | 99.7% | 889G>T;1435G>T |
| 2 | human | 25897 | RNF19A | ring finger protein 19A, RB... | NM_001353837.1 | 99.9% | 99.7% | 889G>T;1435G>T |
| 3 | human | 25897 | RNF19A | ring finger protein 19A, RB... | NM_001353838.2 | 99.9% | 99.7% | 889G>T;1435G>T |
| 4 | human | 25897 | RNF19A | ring finger protein 19A, RB... | NM_015435.4 | 99.9% | 99.7% | 889G>T;1435G>T |
| 5 | human | 25897 | RNF19A | ring finger protein 19A, RB... | NM_183419.4 | 99.9% | 99.7% | 889G>T;1435G>T |
| 6 | human | 25897 | RNF19A | ring finger protein 19A, RB... | XM_017013302.1 | 99.9% | 99.7% | 889G>T;1435G>T |
| 7 | human | 25897 | RNF19A | ring finger protein 19A, RB... | XM_017013303.2 | 99.9% | 99.7% | 889G>T;1435G>T |
| 8 | human | 25897 | RNF19A | ring finger protein 19A, RB... | XM_024447118.1 | 99.9% | 99.7% | 889G>T;1435G>T |
| 9 | human | 25897 | RNF19A | ring finger protein 19A, RB... | XM_024447119.1 | 99.9% | 99.7% | 889G>T;1435G>T |
| 10 | human | 25897 | RNF19A | ring finger protein 19A, RB... | XM_011516956.3 | 93.5% | 93.4% | 889G>T;1300_1301ins162 |
| 11 | human | 25897 | RNF19A | ring finger protein 19A, RB... | XM_017013304.1 | 93.5% | 93.4% | 889G>T;1300_1301ins162 |
| 12 | human | 25897 | RNF19A | ring finger protein 19A, RB... | XM_024447120.1 | 62.9% | 62.8% | 0_1ins930;505G>T |
| 13 | human | 25897 | RNF19A | ring finger protein 19A, RB... | XR_928315.3 | 53% | (many diffs) | |
| 14 | mouse | 30945 | Rnf19a | ring finger protein 19A | NM_013923.2 | 88.4% | 93.3% | (many diffs) |
| 15 | mouse | 30945 | Rnf19a | ring finger protein 19A | XM_006520081.3 | 59.9% | 56.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 2583
- ORF length:
- 2514
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GCAAGAACAA GAAATAGGTT TTATCTCTAA ATATAATGAA GGGCTGTGTG 121 TAAACACTGA CCCTGTCTCA ATTCTAACAA GCATTTTAGA CATGAGTTTA CATCGGCAAA 181 TGGGTTCAGA TCGAGATCTT CAGTCCTCTG CTTCATCTGT GAGCTTGCCT TCAGTCAAAA 241 AGGCACCCAA AAAAAGAAGA ATTTCAATAG GCTCCCTGTT TCGGAGGAAA AAAGATAACA 301 AACGTAAATC AAGGGAGCTA AATGGCGGGG TGGATGGAAT TGCAAGTATT GAAAGTATAC 361 ATTCTGAAAT GTGTACTGAT AAGAACTCCA TTTTCTCTAC AAATACCTCT TCTGACAATG 421 GATTAACTTC CATCAGCAAA CAAATTGGAG ACTTCATAGA GTGCCCTTTG TGCCTTTTGC 481 GGCATTCTAA AGACAGATTT CCTGATATAA TGACTTGTCA TCACAGATCT TGTGTGGATT 541 GCTTACGACA ATATTTAAGG ATAGAAATCT CTGAAAGCAG AGTTAATATT AGTTGCCCAG 601 AATGTACTGA ACGGTTTAAT CCCCATGATA TTCGCTTGAT ATTAAGTGAT GATGTCTTGA 661 TGGAAAAATA CGAAGAATTT ATGCTTAGAC GGTGGCTTGT TGCAGATCCT GATTGTAGGT 721 GGTGTCCAGC TCCAGACTGT GGATATGCTG TGATAGCATT TGGATGTGCC AGCTGTCCAA 781 AATTAACTTG TGGGCGAGAG GGCTGTGGAA CAGAGTTTTG CTACCACTGT AAACAGATTT 841 GGCACCCCAA CCAGACCTGT GATGCTGCTC GACAAGAGAG AGCCCAGAGC TTACGTTTGA 901 GAACTATACG TTCTTCATCC ATTAGTTATA GTCAAGAGTC TGGAGCAGCA GCTGATTATA 961 TAAAGCCATG TCCACGATGT GCTGCTTATA TAATAAAGAT GAATGATGGG AGCTGCAATC 1021 ACATGACATG TGCTGTTTGT GGTTGTGAGT TTTGTTGGTT GTGTATGAAA GAAATCTCAG 1081 ATTTGCATTA TCTAAGTCCA TCAGGATGTA CTTTTTGGGG GAAGAAACCC TGGAGCCGAA 1141 AGAAGAAAAT ATTGTGGCAA CTGGGAACAC TGGTTGGTGC TCCTGTCGGA ATCGCTTTAA 1201 TAGCTGGCAT TGCTATTCCT GCAATGATTA TTGGCATTCC TGTGTATGTG GGCCGCAAGA 1261 TTCACAATCG CTATGAAGGC AAGGATGTTT CAAAGCACAA ACGGAATTTG GCCATAGCAG 1321 GTGGTGTAAC GTTGTCTGTA ATCGTGTCTC CAGTAGTAGC TGCAGTGACT GTAGGTATCG 1381 GTGTTCCTAT TATGTTAGCT TATGTCTATG GCGTAGTTCC AATTTCTCTT TGTCGAAGCG 1441 GAGGTTGTGG AGTCTCAGCA GGCAATGGAA AAGGAGTTAG GATTGAATTT GATGATGAAA 1501 ATTATATAAA TGTTGGTGGA ACTAACACAG CTGTAGACAC AACATCAGTA GCAGAAGCAA 1561 GACACAACCC AAGCATAGGG GAGGGAAGTG TTGGTGGGCT GACTGGCAGT TTGAGTGCAA 1621 GTGGAAGCCA CATGGATCGA ATAGGAGCCA TCCGAGACAA CCTGAGTGAA ACGGCCAGCA 1681 CCATGGCACT AGCTGGAGCC AGTATAACGG GGAGTCTGTC AGGAAGTGCC ATGGTAAACT 1741 GTTTTAACAG GTTGGAAGTA CAAGCAGATG TACAGAAAGA ACGGTACAGT CTAAGTGGAG 1801 AATCTGGCAC AGTCAGCTTG GGAACAGTTA GTGATAATGC CAGCACCAAA GCAATGGCAG 1861 GATCCATTCT GAATTCCTAC ATCCCATTGG ACAAAGAAGG CAACAGTATG GAGGTGCAAG 1921 TAGATATTGA GTCAAAGCCA TCCAAATTCA GGCACAACAG TGGAAGCAGT AGTGTGGATG 1981 ATGGCAGTGC CACCCGAAGT CATGCTGGCG GTTCATCCAG TGGCTTGCCT GAAGGTAAAT 2041 CTAGTGCCAC CAAGTGGTCC AAAGAAGCAA CAGCAGGGAA AAAATCAAAA AGTGGTAAAC 2101 TGAGGAAAAA GGGTAACATG AAGATAAATG AGACGAGAGA GGACATGGAT GCACAGTTGT 2161 TAGAACAACA AAGCACGAAC TCAAGTGAAT TTGAGGCTCC ATCCCTCAGT GACAGTATGC 2221 CTTCTGTAGC AGATTCTCAC TCTAGTCATT TTTCTGAATT TAGTTGTTCT GACCTAGAAA 2281 GCATGAAAAC TTCTTGTAGT CATGGTTCCA GTGATTATCA CACCCGCTTT GCTACTGTTA 2341 ACATTCTTCC TGAGGTAGAA AATGACCGTC TGGAAAATTC CCCACATCAG TGTAGCATTT 2401 CTGTGGTTAC CCAAACTGCT TCCTGTTCAG AAGTTTCACA GTTGAATCAT ATTGCTGAAG 2461 AACATGGTAA CAATGGAATA AAACCTAATG TTGATTTATA TTTTGGCGAT GCACTAAAAG 2521 AAACAAATAA CAACCACTCA CATCAGACAA TGGAATTAAA AGTTGCAATT CAGACTGAAA 2581 TTTTGCCAAC TTTCTTGTAC AAAGTTGGca ttataagaaa gcattgctta tcaatttgtt 2641 gcaacgaac