Construct: ORF ccsbBroadEn_07988

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF015318.1_s300c1, BRDN0000396605
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
DCAF4 (26094)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 26094 DCAF4 DDB1 and CUL4 associated fa... NM_015604.4 99.7% 99.3% 578A>C;1000C>T;1316G>T
2 human 26094 DCAF4 DDB1 and CUL4 associated fa... XM_017021207.1 99.7% 99.3% 578A>C;1000C>T;1316G>T
3 human 26094 DCAF4 DDB1 and CUL4 associated fa... XM_017021208.1 99.7% 99.3% 578A>C;1000C>T;1316G>T
4 human 26094 DCAF4 DDB1 and CUL4 associated fa... NM_001352449.2 99.5% 99.1% (many diffs)
5 human 26094 DCAF4 DDB1 and CUL4 associated fa... XM_017021201.1 99.5% 99.1% (many diffs)
6 human 26094 DCAF4 DDB1 and CUL4 associated fa... XM_017021202.1 99.5% 99.1% (many diffs)
7 human 26094 DCAF4 DDB1 and CUL4 associated fa... XM_017021203.1 99.5% 99.1% (many diffs)
8 human 26094 DCAF4 DDB1 and CUL4 associated fa... XM_017021205.1 99.5% 99.1% (many diffs)
9 human 26094 DCAF4 DDB1 and CUL4 associated fa... XM_017021206.1 99.5% 99.1% (many diffs)
10 human 26094 DCAF4 DDB1 and CUL4 associated fa... NM_001163508.2 98.2% 97.9% (many diffs)
11 human 26094 DCAF4 DDB1 and CUL4 associated fa... XM_017021214.1 95.3% 84.2% (many diffs)
12 human 26094 DCAF4 DDB1 and CUL4 associated fa... NM_001163509.2 95.1% 84% (many diffs)
13 human 26094 DCAF4 DDB1 and CUL4 associated fa... XM_017021212.1 95.1% 84% (many diffs)
14 human 26094 DCAF4 DDB1 and CUL4 associated fa... XM_017021213.2 95.1% 84% (many diffs)
15 human 26094 DCAF4 DDB1 and CUL4 associated fa... NM_001352448.2 88.2% 85.5% (many diffs)
16 human 26094 DCAF4 DDB1 and CUL4 associated fa... XM_017021209.1 88% 85.3% (many diffs)
17 human 26094 DCAF4 DDB1 and CUL4 associated fa... NM_181341.3 87.2% 86.8% (many diffs)
18 human 26094 DCAF4 DDB1 and CUL4 associated fa... NM_181340.3 79.5% 79.1% (many diffs)
19 human 26094 DCAF4 DDB1 and CUL4 associated fa... NR_147990.2 63.2% (many diffs)
20 human 26094 DCAF4 DDB1 and CUL4 associated fa... XM_017021215.2 56.4% 56.1% 0_1ins645;355C>T;671G>T
21 human 26094 DCAF4 DDB1 and CUL4 associated fa... NM_001352447.2 56.3% 56% (many diffs)
22 mouse 73828 Dcaf4 DDB1 and CUL4 associated fa... XM_006516283.2 56.3% 56.6% (many diffs)
23 mouse 73828 Dcaf4 DDB1 and CUL4 associated fa... XM_006516284.2 46.9% 47.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1551
ORF length:
1485
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAA TAAAAGTCGC TGGCAGAGTA GAAGACGACA TGGGAGAAGA AGCCACCAGC
121AGAACCCTTG GTTCAGACTC CGTGATTCTG AAGACAGGTC TGACTCCCGG GCAGCACAGC
181CCGCTCACGA TTCCGGCCAC GGTGATGACG AGTCTCCGTC AACCTCGTCT GGCACAGCTG
241GGACCTCCTC TGTGCCAGAG CTACCTGGGT TTTACTTTGA CCCTGAAAAG AAACGCTACT
301TCCGCTTGCT CCCTGGACAT AACAACTGCA ACCCCCTGAC GAAAGAGAGC ATCCGGCAGA
361AGGAGATGGA GAGCAAGAGA CTGCGGCTGC TCCAGGAAGA AGACAGACGG AAAAAGATTG
421CCAGGATGGG ATTTAATGCA TCTTCCATGC TACGAAAAAG CCAGCTGGGT TTTCTCAACG
481TCACCAATTA CTGCCATTTA GCCCACGAGC TGCGTCTCAG CTGCATGGAG AGGAAAAAGG
541TCCAGATTCG AAGCATGGAT CCCTCCGCCT TGGCAAGCGA CCGATTTAAC CTCATACTGG
601CAGATACCAA CAGTGACCGG CTCTTCACAG TGAACGATGT TACAGTTGGA GGCTCCAAGT
661ATGGTATCAT CAACCTGCAA AGTCTGAAGA CCCCTACGCT CAAGGTGTTC ATGCACGAAA
721ACCTCTACTT CACCAACCGG AAGGTGAATT CGGTGTGCTG GGCCTCGCTG AATCACTTGG
781ATTCCCACAT TCTGCTATGC CTCATGGGAC TCGCAGAGAC TCCAGGCTGT GCCACCCTGC
841TCCCAGCATC ACTGTTCGTC AATAGTCACC CAGGAATAGA CCGGCCTGGC ATGCTCTGCA
901GTTTCCGGAT CCCTGGTGCC TGGTCCTGTG CCTGGTCCCT GAATATCCAA GCAAATAACT
961GCTTCAGTAC AGGCTTGTCT CGGCGGGTCC TGTTGACCAA CGTGGTGACG GGACACCGGC
1021AGTCCTTTGG GACCAACAGT GATGTCTTGG CCCAGCAGTT TGCTTTCATG GCTCCTCTGC
1081TGTTTAATGG CTGCCGCTCT GGGGAAATCT TTGCCATTGA TCTGCGTTGT GGAAATCAAG
1141GCAAGGGATG GAAGGCCACC CGCCTGTTTC ATGATTCAGC AGTGACCTCT GTGCGGATCC
1201TCCAAGATGA GCAATACCTG ATGGCTTCAG ACATGGCTGG AAAGATCAAG CTGTGGGACC
1261TGAGGACCAC GAAGTGCGTA AGGCAGTACG AAGGCCACGT GAATGAGTAC GCCTACCTGC
1321CCCTGCATGT GCACGAGGAA GAAGGAATCC TGGTGGCAGT GGGCCAGGAC TGCTACACGA
1381TAATCTGGAG CCTCCACGAT GCCCGCCTAC TGAGAACCAT ACCCTCCCCG TACCCTGCCT
1441CCAAGGCCGA CATTCCCAGT GTGGCCTTCT CGTCGCGGCT GGGGGGCTCC CGGGGCGCGC
1501CGGGGCTGCT CATGGCTGTC GGGCAGGACC TTTACTGTTA CTCCTACAGC TACCCAACTT
1561TCTTGTACAA AGTtggcatt ataagaaagc attgcttatc aatttgttgc aacgaac

Download FASTA (ORF) (Full)

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