Construct: ORF ccsbBroadEn_08007

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF013444.1_s300c1, BRDN0000388369
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CABYR (26256)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 26256 CABYR calcium binding tyrosine ph... NM_138644.2 99.9% 100% 831T>C
2 human 26256 CABYR calcium binding tyrosine ph... NM_153769.3 99.9% 100% 831T>C
3 human 26256 CABYR calcium binding tyrosine ph... XM_005258247.2 95.1% 95.2% 143_144ins54;777T>C
4 human 26256 CABYR calcium binding tyrosine ph... NM_138643.3 74% 74.1% 0_1ins294;537T>C
5 human 26256 CABYR calcium binding tyrosine ph... NM_153770.3 58.3% 58.3% 538_539ins474
6 mouse 71132 Cabyr calcium-binding tyrosine-(Y... NM_181731.3 82% 74.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1203
ORF length:
1137
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAT TTCTTCAAAG CCCAGACTTG TCGTACCCTA TGGCCTCAAG ACTCTGCTCG
121AGGGAATTAG CAGAGCTGTT CTCAAAACCA ACCCATCAAA CATCAACCAG TTTGCAGCAG
181CTTATTTTCA AGAACTTACT ATGTATAGAG GGAATACTAC TATGGATATA AAAGATCTGG
241TTAAACAATT TCATCAGATT AAAGTAGAGA AATGGTCAGA AGGAACGACA CCACAGAAGA
301AATTAGAATG TTTAAAAGAA CCAGGAAAAA CATCTGTAGA ATCTAAAGTA CCTACCCAGA
361TGGAAAAATC TACAGACACA GACGAGGACA ATGTAACCAG AACAGAATAT AGTGACAAAA
421CCACCCAGTT TCCATCAGTT TATGCTGTGC CAGGCACTGA GCAAACGGAA GCAGTTGGTG
481GTCTTTCTTC CAAACCAGCC ACCCCTAAGA CTACTACCCC ACCCTCATCA CCACCTCCAA
541CAGCTGTCTC ACCAGAGTTT GCCTACGTCC CAGCTGACCC AGCTCAGCTT GCTGCTCAGA
601TGTTAGCAAT GGCAACAAGT GAACGAGGAC AACCACCACC ATGTTCTAAC ATGTGGACCC
661TTTATTGTCT AACTGATAAG AATCAACAAG GTCACCCATC ACCGCCACCT GCACCTGGGC
721CTTTTCCCCA AGCAACCCTC TATTTACCTA ATCCTAAGGA TCCACAGTTT CAGCAGCATC
781CACCAAAAGT CACTTTTCCA ACTTATGTGA TGGGCGACAC CAAGAAGACC AGTGCCCCAC
841CTTTTATCTT AGTAGGCTCA AATGTTCAGG AAGCACAGGG ATGGAAACCT CTTCCCGGAC
901ATGCTGTCGT TTCACAGTCA GATGTCTTGA GATATGTTGC AATGCAAGTG CCCATTGCTG
961TTCCTGCAGA TGAGAAATAC CAGAAACATA CCCTAAGTCC CCAGAATGCT AATCCTCCAA
1021GTGGACAAGA TGTCCCCAGG CCAAAAAGCC CTGTTTTCCT TTCTGTTGCT TTCCCAGTAG
1081AAGATGTAGC TAAAAAAAGT TCAGGATCTG GTGACAAATG TGCTCCCTTT GGAAGTTACG
1141GTATTGCTGG GGAGGTAACC GTGACTACTG CTCACAAACG TCGCAAAGCA GAAACTGAAA
1201ACTGCCCAAC TTTCTTGTAC AAAGTtggca ttataagaaa gcattgctta tcaatttgtt
1261gcaacgaac

Download FASTA (ORF) (Full)

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