Construct: ORF ccsbBroadEn_08025
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF002100.1_s300c1, BRDN0000387936
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- OR10H3 (26532)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 26532 | OR10H3 | olfactory receptor family 1... | NM_013938.1 | 99.8% | 99.6% | 670G>A |
| 2 | human | 126541 | OR10H4 | olfactory receptor family 1... | NM_001004465.1 | 93.3% | 89.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1017
- ORF length:
- 948
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GCCTGGTCAG AACTACAGAA CCATATCTGA ATTTATCCTC TCTGGCTTCT 121 CAGCCTTCCC CCAGCAGCTC CTGCCTGTCT TGTTCCTGCT GTACCTCCTG ATGTTCCTGT 181 TCACATTGCT TGGCAACCTT CTTATCATGG CCACAGTTTG GATTGAACGC AGACTCCACA 241 CACCCATGTA CCTCTTCTTG TGTGCCCTCT CCATCTCTGA GATTCTGTTC ACTGTTGCCA 301 TCACCCCTCG CATGCTGGCT GATCTGCTCT TCACCCATCG TTCCATCACC TTTGTGGCTT 361 GTGCCATTCA GATGTTCTTC TCCTTCATGT TTGGCTTCAC TCACTCCTTC CTTCTCATGG 421 TCATGGGCTA TGATCACTAC GTGACCATCT GCCACCCACT GCATTACAAC ATGCTAATGA 481 GTCCCCGTGG CTGTGCCCAT CTTGTGGCCT GGACCTGGGC TGGTGGCTCG GTCATGGGGA 541 TGATGGTGAC AATGATGGTT TTTCACCTCA CTTTCTGTGG GTCTAATGTG ATCCACCATT 601 TTCTCTGTCA TGTGCTTTCC CTCTTGAAGT TGGCCTGTGG GAGCAAGACA TCATCTGTCA 661 TCATGGGTGT GATGCTGGTG TGTGTCACAG CCCTGATAGG CTGTTTGTTC CTCATCATCC 721 TCTCCTTTGT CTTCATTATG GCTGCCATCT TGAGGATTCC TTCTGCTGAG GGCCGGCACA 781 AGACTTTCTC CACTTGTGTA TCCCACCTCA CTGTGGTGGT CATGCACTAT AGTTTTGCCT 841 CCCTTATCTA CCTCAAACCC AAGGGCCTCC ATTCTATGTA CAGTGATGCC TTGATGGCCA 901 CCACCTATAC TGTCTTCACC CCCTTCCTCA GCCCAATCAT TTTCAGTCTA AGGAACAAGG 961 AGCTGAAGAA TGCCATAAAT AAAAACTTTT GCAGAAGGTT CTGCCCTCTA AGCTCCTTGC 1021 CAACTTTCTT GTACAAAGTt ggcattataa gaaagcattg cttatcaatt tgttgcaacg 1081 aac