Construct: ORF ccsbBroadEn_08055
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF012203.1_s300c1, BRDN0000392059
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- DMAC2L (27109)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 27109 | DMAC2L | distal membrane arm assembl... | XM_011536656.3 | 91.9% | 88.2% | (many diffs) |
| 2 | human | 27109 | DMAC2L | distal membrane arm assembl... | NM_001003805.3 | 87.6% | 87.4% | 0_1ins45;8C>T;144C>T |
| 3 | human | 27109 | DMAC2L | distal membrane arm assembl... | XM_011536657.3 | 87.6% | 87.4% | 0_1ins45;8C>T;144C>T |
| 4 | human | 27109 | DMAC2L | distal membrane arm assembl... | NM_015684.4 | 80.9% | 77.2% | (many diffs) |
| 5 | human | 27109 | DMAC2L | distal membrane arm assembl... | XM_011536654.3 | 72.8% | 65.2% | (many diffs) |
| 6 | human | 27109 | DMAC2L | distal membrane arm assembl... | XM_011536655.3 | 72.8% | 65.2% | (many diffs) |
| 7 | human | 27109 | DMAC2L | distal membrane arm assembl... | XM_024449540.1 | 69.3% | 68.5% | (many diffs) |
| 8 | human | 27109 | DMAC2L | distal membrane arm assembl... | XM_011536651.3 | 57.3% | 53.1% | (many diffs) |
| 9 | human | 27109 | DMAC2L | distal membrane arm assembl... | XM_011536650.3 | 57.1% | 52.8% | (many diffs) |
| 10 | human | 27109 | DMAC2L | distal membrane arm assembl... | XM_011536652.1 | 52.8% | 50.2% | (many diffs) |
| 11 | human | 27109 | DMAC2L | distal membrane arm assembl... | NM_001003803.3 | 50.5% | 49.7% | (many diffs) |
| 12 | human | 27109 | DMAC2L | distal membrane arm assembl... | NM_001370605.1 | 50.5% | 49.7% | (many diffs) |
| 13 | human | 27109 | DMAC2L | distal membrane arm assembl... | XM_005267537.4 | 50.5% | 49.7% | (many diffs) |
| 14 | human | 27109 | DMAC2L | distal membrane arm assembl... | XM_011536653.3 | 50.5% | 49.7% | (many diffs) |
| 15 | human | 27109 | DMAC2L | distal membrane arm assembl... | XM_017021220.2 | 50.5% | 49.7% | (many diffs) |
| 16 | human | 27109 | DMAC2L | distal membrane arm assembl... | XM_011536649.2 | 48.7% | 45.1% | (many diffs) |
| 17 | human | 27109 | DMAC2L | distal membrane arm assembl... | XR_943415.3 | 29.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 447
- ORF length:
- 381
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTG CTGTGCGGTC TCTGAGCAGC GACTCACCTG TGCAGATCAA ATGATGCTGT 121 TTGGAAAAAT TTCCCAGCAG TTGTGTGGCG TAAAGAAACT CCCATGGTCA TGTGACTCCA 181 GATACTTCTG GGGCTGGTTG AATGCAGTGT TTAATAAGGT GGATTATGAT CGCATCAGGG 241 ATGTTGGCCC TGATAGGGCG GCATCCGAGT GGTTGCTGCG CTGTGGGGCC ATGGTGCGCT 301 ACCATGGCCA GGAGAGGTGG CAGAAGGACT ACAACCACCT TCCAACAGGC CCTCTGGACA 361 AATACAAGAT TCAGGCGATC GACGCCACCG ACTCTTGTAT CATGAGCATT GGATTTGATC 421 ACATGGAAAC CTCAAATATT TGTTGTTACC CAACTTTCTT GTACAAAGTt ggcattataa 481 gaaagcattg cttatcaatt tgttgcaacg aac