Construct: ORF ccsbBroadEn_08061
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014526.1_s300c1, BRDN0000397106
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- MORC1 (27136)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 27136 | MORC1 | MORC family CW-type zinc fi... | NM_014429.4 | 99.9% | 99.8% | 1408T>A |
| 2 | human | 27136 | MORC1 | MORC family CW-type zinc fi... | XM_011512692.1 | 99.7% | 99.5% | 690_695delGTATGT;1414T>A |
| 3 | human | 27136 | MORC1 | MORC family CW-type zinc fi... | XM_005247362.2 | 97% | 96.8% | 1331_1420del;1498T>A |
| 4 | human | 27136 | MORC1 | MORC family CW-type zinc fi... | XM_011512691.1 | 96.8% | 96.5% | 690_695delGTATGT;1337_1426del;1504T>A |
| 5 | human | 27136 | MORC1 | MORC family CW-type zinc fi... | XM_017006169.2 | 92.6% | 91.1% | (many diffs) |
| 6 | human | 27136 | MORC1 | MORC family CW-type zinc fi... | XM_011512693.1 | 90.4% | 90.1% | (many diffs) |
| 7 | human | 27136 | MORC1 | MORC family CW-type zinc fi... | XM_011512694.1 | 87% | 85.9% | (many diffs) |
| 8 | human | 27136 | MORC1 | MORC family CW-type zinc fi... | XM_011512696.2 | 74.7% | 74.1% | (many diffs) |
| 9 | human | 27136 | MORC1 | MORC family CW-type zinc fi... | XM_017006170.1 | 74.6% | 74.5% | 0_1ins747;661T>A |
| 10 | human | 27136 | MORC1 | MORC family CW-type zinc fi... | XM_011512697.2 | 72.4% | 72.2% | 0_1ins747;584_673del;751T>A |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 3018
- ORF length:
- 2952
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA CGACAGGTAC CCTGCGCTTC AGCGGGCCCA GCTGCGTCTG GATTTCATCC 121 ACGCCAACTC CACCACTCAC AGTTTCCTTT TTGGAGCACT GGCTGAATTG CTGGACAATG 181 CAAGAGATGC AGGGGCTGAA AGACTTGATG TCTTTTCAGT GGATAATGAA AAACTGCAGG 241 GGGGATTCAT GTTGTGTTTC CTGGATGATG GATGTGGCAT GAGCCCTGAG GAAGCTTCAG 301 ACATCATTTA CTTTGGACGA TCCAAAAAAC GGCTGTCAAC CTTGAAGTTC ATAGGGCAAT 361 ACGGCAATGG TCTTAAAAGT GGGTCCATGA GAATTGGAAA AGACTTTATT CTTTTTACGA 421 AGAAGGAAGA AACGATGACC TGTGTGTTTT TTTCTCAGAC ATTCTGTGAA GAAGAAAGTC 481 TTAGTGAGGT TGTAGTTCCA ATGCCCTCAT GGTTAATAAG AACCAGAGAA TCTGTCACAG 541 ATGATCCCCA GAAATTTGCA ATGGAATTAT CTATAATTTA TAAATACTCC CCATTTAAAA 601 CTGAAGCAGA ATTGATGCAG CAGTTTGATG TGATCTATGG AAAATGTGGT ACTTTGCTGG 661 TTATTTATAA CTTGAAGCTT CTGCTTAATG GAGAACCAGA GTTGGATGTT AAAACTGACA 721 AAGAAGATAT ACTGATGGCT GGAGCTCTGG AGGATTTCCC AGCGAGGTGG TCATTCAGAG 781 CCTACACATC TGTTCTGTAT TTTAACCCAT GGATGAGAAT ATTCATTCAA GCCAAGAGAG 841 TTAAAACTAA ACATCTTTGC TATTGCCTCT ACAGACCCAG AAAGTATCTT TATGTCACAT 901 CTTCTTTTAA AGGAGCATTT AAAGATGAAG TTAAAAAGGC AGAAGAAGCA GTAAAGATTG 961 CTGAATCCAT ATTGAAAGAA GCACAAATCA AAGTAAACCA GTGTGACAGA ACCTCTTTAT 1021 CTTCTGCCAA GGATGTATTA CAGAGAGCTT TGGAAGATGT AGAAGCAAAG CAAAAGAATC 1081 TTAAAGAGAA ACAAAGAGAA TTAAAAACAG CAAGAACGCT CTCCCTGTTC TATGGAGTGA 1141 ACGTAGAAAA CCGAAGCCAA GCTGGAATGT TCATTTACAG TAATAACCGT TTGATCAAAA 1201 TGCATGAAAA AGTGGGCTCA CAGTTGAAAC TGAAGTCCTT ACTTGGCGCA GGCGTGGTTG 1261 GAATTGTTAA TATACCCTTG GAGGTCATGG AACCATCCCA TAATAAACAG GAATTTCTCA 1321 ATGTCCAAGA GTATAATCAT CTACTAAAAG TCATGGGACA GTACTTGGTC CAGTACTGTA 1381 AGGACACCGG CATCAATAAT AGAAATTTAA CATTGTTTTG CAATGAATTT GGATACCAGA 1441 ATGACATCGA TGTGGAGAAA CCTTTAAATT CTATTCAATA TCAAAGAAGA CAAGCCATGG 1501 GTATCCCATT CATCATACAA TGTGATCTTT GTCTTAAATG GAGAGTCTTG CCTTCCTCTA 1561 CTAATTATCA GGAAAAAGAA TTTTTTGACA TTTGGATTTG TGCTAATAAT CCCAACCGCT 1621 TGGAAAACAG TTGTCATCAG GTAGAATGTC TACCTTCCAT CCCACTGGGC ACCATGAGCA 1681 CAATATCACC ATCAAAAAAT GAGAAAGAGA AGCAACTTAG AGAGTCGGTC ATAAAGTATC 1741 AAAATAGACT GGCAGAACAG CAGCCACAGC CTCAATTTAT ACCAGTGGAC GAAATCACTG 1801 TCACTTCCAC CTGCCTAACT TCAGCACATA AGGAAAATAC CAAAACCCAG AAAATCAGGC 1861 TTTTGGGCGA TGACTTGAAG CATGAATCTC TTTCATCCTT TGAGCTTTCA GCGAGCCGTA 1921 GAGGACAGAA AAGAAACATA GAAGAGACAG ACTCTGATGT AGAGTATATT TCAGAAACAA 1981 AAATTATGAA AAAGTCTATG GAGGAGAAAA TGAACTCTCA ACAGCAGAGA ATTCCAGTAG 2041 CTCTGCCAGA AAATGTCAAA CTAGCTGAGA GATCCCAGAG AAGTCAGATT GCTAATATTA 2101 CCACTGTCTG GAGAGCTCAA CCAACTGAAG GGTGCCTGAA GAATGCCCAG GCCGCTTCTT 2161 GGGAAATGAA AAGGAAGCAG AGTCTGAACT TTGTAGAGGA ATGTAAGGTA TTGACTGAAG 2221 ATGAGAACAC GAGTGATTCA GATATAATCC TGGTTTCAGA TAAAAGCAAC ACTGATGTTT 2281 CATTGAAACA AGAAAAAAAG GAAATTCCTC TTTTAAACCA AGAAAAACAG GAGCTGTGCA 2341 ATGATGTTCT AGCAATGAAA AGAAGCTCTT CATTACCTAG CTGGAAAAGC TTGCTCAATG 2401 TGCCGATGGA AGATGTGAAT CTAAGTTCTG GACACATAGC CAGAGTTTCT GTGAGTGGCA 2461 GTTGTAAAGT TGCTTCTTCG CCAGCGTCTT CTCAAAGCAC ACCTGTCAAG GAAACAGTGA 2521 GAAAACTGAA GTCTAAGTTA AGGGAGATTC TTCTGTATTT TTTTCCTGAG CATCAGCTAC 2581 CATCAGAATT GGAAGAACCT GCATTAAGTT GTGAGCTGGA GCAGTGCCCA GAGCAGATGA 2641 ACAAAAAGCT GAAAATGTGT TTCAACCAGA TACAGAATAC TTACATGGTC CAATATGAAA 2701 AAAAAATAAA GAGGAAATTG CAGTCCATTA TCTATGATTC AAATACAAGA GGAATACATA 2761 ATGAAATCTC TCTGGGGCAA TGTGAAAATA AAAGAAAAAT CTCTGAGGAT AAGCTGAAGA 2821 ATCTTCGTAT AAAACTGGCA CTATTGTTGC AGAAACTCCA ACTGGGTGGT CCAGAAGGTG 2881 ACCTGGAGCA GACTGACACT TATTTAGAAG CTTTGCTTAA AGAAGATAAT CTTCTCTTCC 2941 AGAACAATTT AAATAAAGTA ACTATAGATG CAAGACATAG ACTCCCTTTA GAAAAAAATG 3001 AAAAGACTTC GGAAAATTAC CCAACTTTCT TGTACAAAGT tggcattata agaaagcatt 3061 gcttatcaat ttgttgcaac gaac